1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactataaccatcatatgtaatcttctaactttgcaagtttgcatggccttttgctgaggattttatcgtgttggaatgaccagagattgtgctttttttcttttgtatttcagATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGGTGGATGGCTTTTGGTTCAAGACACCATCGAGATCATTGACAAGCTCAGT
species | Vitis vinifera |
transcript | Vv13s0067g01690.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTTACGATCTACTGCATTCCAGTTTCCTCCTCGGGAATCTTACACAGAG ATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGGEST: gi|29783491|gb|CB349682.2|CB349682
genomic: ACTTACGATCTACTGCATTCCAGTTTCCTCCTCGGGAATCTTACACAGAGgtactataac ... tgtatttcagATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGG
EST: ACTTACGATCTACTGCATTCCAGTTTCCTCCTCGGGAATCTTACACAGAG ATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGGEST: gi|51051449|gb|CO819062.1|CO819062
genomic: ACTTACGATCTACTGCATTCCAGTTTCCTCCTCGGGAATCTTACACAGAGgtactataac ... tgtatttcagATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGG
EST: ACTTACGATTTACTGCATTCCAGTTTCCTCCTCGGGAATCTTACACAGAG ATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGGEST: gi|110390996|gb|EC955947.1|EC955947
genomic: ACTTACGATCTACTGCATTCCAGTTTCCTCCTCGGGAATCTTACACAGAGgtactataac ... tgtatttcagATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGG
EST: ACTTACGATCTACTGCATTCCAGTTTCCTCCTCGGGAATCTTACACAGAG ATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGG
genomic: ACTTACGATCTACTGCATTCCAGTTTCCTCCTCGGGAATCTTACACAGAGgtactataac ... tgtatttcagATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGG
gattttatcgtgttggaatgaccagagattgtgctttttttcttttgtatttcagATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGGTGGATGGCTTTTGGTTCAAGACACCATCGAGATCATTGACAAGCTCAGT
tgctttttttcttttg CT-rich tract
tttttttcttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactataaccatcatatgtaatcttctaactttgcaagtttgcatggccttttgctgaggattttatcgtgttggaatgaccagagattgtgctttttttcttttgtatttcagATGTGATATTATAGATGTAGCTGTGGAGATGGATCGCATACTGAGACCAGGTGGATGGCTTTTGGTTCAAGACACCATCGAGATCATTGACAAGCTCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA