Sequence
atgc intronic sequence ATGC exonic sequencegtctctatattctttctcccattgcccatactatttaacatcttgctcaaattggttatatatatcttattgtcctgtgtgttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAGGTGGTGGGGGTGCATGATACAAAGAGCATATGTTTAAGGGCACTCGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g00330.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G06600.1 (Glycine max), 3'ss of exon 6
----------gtctctatattctttctcccattgcccatact----atttaacatcttgctcaaattggttatatatatcttattgtcctgtgtgttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAGGTGGTGGGGGTGCATGATACAAAGAGCATATGTTTAAGGGCACTCGCTC
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taagtacaatttaattgtacaaatgtaaaaatgagagagatcgaaaactaaaaaagctttattaattgatgaattttgt-ttattactatgtgaatggcagTTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAGGTGATAGGAATGCATGACACAAAGAGCATATGTTTGAGGGCACTTGCTA
upper sequence: Vv13s0067g00330.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G03280.1 (Glycine max), 3'ss of exon 7
-------------gtctctatattct--ttctcccattgcccatactatttaacatcttgct-caaattggttatatatatcttattgtcctgtgtgttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAGGTGGTGGGGGTGCATGATACAAAGAGCATATGTTTAAGGGCACTCGCTC
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gcaaaattaactgattttagtaatgaagtatatctgtagcttgaggttgttacttgttagttactaactgatgattggtgtattcctac---gtaaatgacagTTCATCACATTTGGGTTTGCTTGTACGCCATTGTATTTCGTGTGGGAGAAAGTGATAGGAATGCATGACACAAAGAGCATATTTTTGAGGGCAATAGCGA
upper sequence: Vv13s0067g00330.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G35080.1 (Glycine max), 3'ss of exon 7
---gtctctata-ttctttctcccattgcccatacta-tttaacatcttgctcaaattggttat------atatatcttattgtcctgtgtg--ttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAGGTGGTGGGGGTGCATGATACAAAGAGCATATGTTTAAGGGCACTCGCTC
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aatatataaataattacctaatccaatggcaaaataactctggttttaggttgttattagttactaactgataattggtgtattcctatgtaactggcagTTCATCACATTCGGGTTTGCTTGTACGCCATTGTATTTCGTGTGGGAGAAAGTGATAGGAATGCATGACACAAAGAGCATATTTTTTAGGGCACTAGCGA
upper sequence: Vv13s0067g00330.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G42290.1 (Glycine max), 3'ss of exon 6
---gtctctatattctttctcccattgcccatactattta----acatcttgctcaaattggttatata------tatcttattgtcctgtgtgttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAGGTGGTGGGGGTGCATGATACAAAGAGCATATGTTTAAGGGCACTCGCTC
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attaagtacaatttacttgcacaaatgtaaaaaggatagagagcaaaaattggaaagttttattaactgacgaatttgtttattactatgtgaatgacagTTCATCACTTTTGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAAGTGATAAAAATGCATGACACAAAGAGCCTATGTTTGAGGGCACTTGCTA
upper sequence: Vv13s0067g00330.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ18760 (Selaginella moellendorffii), 3'ss of exon 6
gtctctatattctttctcccattgcccatactatttaacatcttgctcaaattggttatatatatcttattgtcctgtgtgttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAGGTGGTGGGGGTGCATGATACAAAGAGCATATGTTTAAGGGCACTCGCTC
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--------------------gtaagaaagatcatcgatgatcta--tgatcttcgttcctggagctaaacttcccattgtctcgcagTTTATTACGTTTGGATTTGCTTGCACGCCCTTGTACTTCGTGTGGGAGAAGATAATTGGCGTCCATAGAAGTCCAAGGTTCCTACTTCGAGCAGCTGCCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33407777|gb|CF213404.1|CF213404EST: CCCAAACTGGATTCCGTGATGCTGCTGTGATCCTAATGCTCATCCACCAG TTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAG
genomic: CCCAAACTGGATTCCGTGATGCTGCTGTGATCCTAATGCTCATCCACCAGgtctctatat ... tgtgttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAG
EST:
gi|77585741|gb|DV221963.1|DV221963EST: CCCAAACTGGATTCCGTGATGCTGCTGTGATCCTAATGCTCATCCACCAG TTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAG
genomic: CCCAAACTGGATTCCGTGATGCTGCTGTGATCCTAATGCTCATCCACCAGgtctctatat ... tgtgttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttaacatcttgctcaaattggttatatatatcttattgtcctgtgtgttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAGGTGGTGGGGGTGCATGATACAAAGAGCATATGTTTAAGGGCACTCGCTC
atttaac putative branch site (score: 3)
aaattggttatatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctctatattctttctcccattgcccatactatttaacatcttgctcaaattggttatatatatcttattgtcctgtgtgttgcagTTCATTACATTTGGATTTGCTTGTACACCCCTGTATTTTGTGTGGGAGAAGGTGGTGGGGGTGCATGATACAAAGAGCATATGTTTAAGGGCACTCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA