1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaagatattcctttttttcttttgttatccttttctttttttctgttgtattttttttaatgtcttctattttgagttttatcttgttattgtttttataaacagGCCTACACAAGTCAAATAGTAGTAATGGCTATGTTAGCTCTGGCAATTGGAGATGACACAAGTTCTAGTCTAGGAAGGAGAGAGTCTATAATAGACGGTT
species | Vitis vinifera |
transcript | Vv13s0064g00050.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGTTCACATAAATGCTGGCTGTGAAATAGGTGTAGCAAGTACCAAG GCCTACACAAGTCAAATAGTAGTAATGGCTATGTTAGCTCTGGCAATTGGAEST: gi|351028873|gb|FQ434874.1|FQ434874
genomic: GTGGTGTTCACATAAATGCTGGCTGTGAAATAGGTGTAGCAAGTACCAAGgtaaagatat ... ttataaacagGCCTACACAAGTCAAATAGTAGTAATGGCTATGTTAGCTCTGGCAATTGGA
EST: GTGGTGTTCACATAAATGCTGGCTGTGAAATAGGTGTAGCAAGTACCAAG GCCTACACAAGTCAAATAGTAGTAATGGCTATGTTAGCTCTGGCAATTGGA
genomic: GTGGTGTTCACATAAATGCTGGCTGTGAAATAGGTGTAGCAAGTACCAAGgtaaagatat ... ttataaacagGCCTACACAAGTCAAATAGTAGTAATGGCTATGTTAGCTCTGGCAATTGGA
ttttttttaatgtcttctattttgagttttatcttgttattgtttttataaacagGCCTACACAAGTCAAATAGTAGTAATGGCTATGTTAGCTCTGGCAATTGGAGATGACACAAGTTCTAGTCTAGGAAGGAGAGAGTCTATAATAGACGGTT
ttttaat putative branch site (score: 3)
ttgttttt putative PPT
tattttgagttttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagatattcctttttttcttttgttatccttttctttttttctgttgtattttttttaatgtcttctattttgagttttatcttgttattgtttttataaacagGCCTACACAAGTCAAATAGTAGTAATGGCTATGTTAGCTCTGGCAATTGGAGATGACACAAGTTCTAGTCTAGGAAGGAGAGAGTCTATAATAGACGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA