1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gagtttggtattctgaaaccaatcctgttaatatacttttctgcatcatttatgctttaatttgttgagtttgacgggtagaaggcctgatattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAG
species | Vitis vinifera |
transcript | Vv13s0019g05360.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|351046365|gb|FQ452981.1|FQ452981
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGGTCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|352785971|gb|FQ481765.1|FQ481765
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGEST: gi|351057061|gb|FQ448578.1|FQ448578
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCEST: gi|351055155|gb|FQ440494.1|FQ440494
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGC
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCTACTCAGTTACAATTGGTGTGEST: gi|351043628|gb|FQ451559.1|FQ451559
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATA-CAAG GAAGATCGAAGCAACTCAGEST: gi|351037387|gb|FQ460586.1|FQ460586
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACCAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGEST: gi|349827032|gb|FQ421305.1|FQ421305
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|77581507|gb|DV219700.1|DV219700
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: GGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|351052907|gb|FQ453894.1|FQ453894
genomic: GGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: TGATGAACTATGGATCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACEST: gi|351047124|gb|FQ454734.1|FQ454734
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTAC
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|71865533|gb|DT014588.1|DT014588
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|351047391|gb|FQ451903.1|FQ451903
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGEST: gi|351038420|gb|FQ461112.1|FQ461112
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|351031620|gb|FQ459877.1|FQ459877
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGTGEST: gi|161713236|gb|FC063668.1|FC063668
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAT GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|351047415|gb|FQ451927.1|FQ451927
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCATTTACEST: gi|351052809|gb|FQ456536.1|FQ456536
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTAC
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|352793787|gb|FQ481941.1|FQ481941
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTEST: gi|351052237|gb|FQ452391.1|FQ452391
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGT
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAGG GAAGATCGAAGCAACTCAGTTAEST: gi|351053072|gb|FQ456679.1|FQ456679
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTA
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATTGAAGCAACTCAGTTTACA-TTGGTGTGGCAGATGAGCATATTGGEST: gi|351056381|gb|FQ454242.1|FQ454242
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTT-ACAATTGGTGTGGCAGATGAGCATATTGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATEST: gi|349833330|gb|FQ416708.1|FQ416708
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGAT
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|351054352|gb|FQ450435.1|FQ450435
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTTACA-TTGGTGTGGCAGATGAGCATATTGGEST: gi|351046045|gb|FQ441428.1|FQ441428
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTT-ACAATTGGTGTGGCAGATGAGCATATTGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGGTCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|352791390|gb|FQ480969.1|FQ480969
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGATCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTEST: gi|351031627|gb|FQ459884.1|FQ459884
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGT
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGGTCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|352793790|gb|FQ481944.1|FQ481944
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTT-CAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAAEST: gi|110391242|gb|EC956204.1|EC956204
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAA
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|351035492|gb|FQ463337.1|FQ463337
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|352790487|gb|FQ478127.1|FQ478127
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGEST: gi|351029639|gb|FQ427479.1|FQ427479
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGEST: gi|351032704|gb|FQ462418.1|FQ462418
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAA-AGTCGAAGCAACTCAGTTACATTTGGEST: gi|352786228|gb|FQ478839.1|FQ478839
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGA-TCGAAGCAACTCAGTTACAATTGG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCCACTCAGTTACAATTGGTGTGGCAGEST: gi|110376153|gb|EC941197.1|EC941197
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAG
EST: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAG GAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
genomic: CGATGAACTATGGACCAAATGGGGCTGGAGGAAAGTTTCAGAATAACAAGgttcaaccta ... tattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGG
tcatttatgctttaatttgttgagtttgacgggtagaaggcctgatattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAG
gcctgat putative branch site (score: 4)
tttaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtttggtattctgaaaccaatcctgttaatatacttttctgcatcatttatgctttaatttgttgagtttgacgggtagaaggcctgatattttgcagGAAGATCGAAGCAACTCAGTTACAATTGGTGTGGCAGATGAGCATATTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - ccaatcc
- - - - - - - - - - - - - - - - - - - - ctgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcctga