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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagtagcttgtgaccattacctcagtccatgatacagtcatgtttattatgaacaaaaggaaatcaataattgttgtatgaattcgatgtgatttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG

Basic information

species Vitis vinifera
transcript Vv13s0019g05250.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os08g44810.1 (Oryza sativa), 3'ss of exon 7
gttaagtagcttgtgaccattacctcagtccatgatacagtcatgtttattatgaacaaaaggaaatcaataattgttgtatgaattcgatgtgatttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG
                    ||| | |   | | | |  ||  | ||| | ||| |     |    |  ||         || |||| ||  || ||| || ||||||| || ||||| ||||| || ||||| ||||| |||||| | || ||||||||||| ||||| || ||||||
-------------------gtacttga---cgttaaatcgtagtatttgtgatgtatttttgtggttttatttcaaacaaat-aattggacttgttttttgtagCTGGCACTAAAAGCGGGTGTATTTTATGACAAAGTATCAAATATGACTATTTGGGGGAACCACTCAACAACTCAG

upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G129513_T01 (Zea mays), 3'ss of exon 7
gttaagtagcttgtgaccattacctcagtccatgatacagtcatgtttattatgaacaaaaggaaatcaataattgttgtatgaattcgatgtgatttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG
            |||||     | | |  |  |  ||          |   ||    || ||||||   | | |          |  | || |  ||| || ||||||| || ||||||||||| || ||||| ||||| ||||| || || ||||||||||| || ||||| ||||||
------------gtgactgac-cttgaaactttattatgtctcctcctcccattcctaacaggaaaaacagattaagcaatcacacacaatctcctttttgtagCTGGCACTAAAAGCAGGTGTATTTTATGACAAAGTATCAAACGTGACTATTTGGGGGAACCATTCGACGACTCAG

upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G33380.1 (Glycine max), 3'ss of exon 9
gttaagtagcttgtgaccattacctcagtccatgatacagtcatgtttattatgaacaaaaggaaatcaataattgttgtatgaattcgatgtgatttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG
|| |   || || | | | | || |       |  || | |  | | ||  ||  | ||||  | | | ||  |   || ||    || ||   ||  |  ||||| || ||||| |||||||||||||||||||||||||||||||| || || ||||| || ||||| || ||||||
gtaacaaagtttataagcttcactt-------ttttaaaattgt-tctacaataga-aaaataacaactatcttctctgcattgtctcaataaaat--gcacagCTAGCCCTCAAGGCAGGTGTCTTCTATGATAAAGTGTCAAATGTGACAATATGGGGCAACCACTCAACTACTCAG

upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G34150.3 (Glycine max), 3'ss of exon 7
gttaagtagcttgtgaccattacctcagtccatgatacagtcatgtttattatgaacaaaaggaaatcaataattgttgtatgaattcgatgtgatttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG
|| | | || || | |     || | | |   | | |  ||  |          || ||||  | | | ||  |   || ||    || ||   ||  | |||||| || ||||| |||||||| ||||||||||||||||||||||| || || ||||| || ||||| || ||||||
gtaacgaagtttataa-----acttaactttttaaaattgttctacaatagggaaaaaaaataacaactatcttctctgcattgtctcaattaaat--gcgcagCTAGCCCTCAAGGCAGGTGTGTTCTATGATAAAGTGTCAAATGTGACGATATGGGGCAACCACTCAACTACTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550427|gb|CF518645.1|CF518645
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|32249928|gb|CD715747.1|CD715747
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|30137894|gb|CB923232.1|CB923232
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|27578522|gb|CB001217.1|CB001217
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAA
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAA
EST: gi|351040604|gb|FQ438148.1|FQ438148
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|37190333|gb|CF609682.1|CF609682
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|28963316|gb|CB342349.1|CB342349
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|110392317|gb|EC957652.1|EC957652
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|351046814|gb|FQ454424.1|FQ454424
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|349811478|gb|FQ409474.1|FQ409474
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|18458011|gb|BM436289.1|BM436289
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
EST: gi|29785366|gb|CB342287.2|CB342287
EST:     AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAG                         CTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT
genomic: AGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagc ... atttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgaacaaaaggaaatcaataattgttgtatgaattcgatgtgatttgtgcagCTGGCTCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAATGTAACCATTTGGGGGAATCACTCGACCACTCAG
              aaatcaataattgtt  TA-rich tract