Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctgatatttcctcactgtatttcatatgattttctgcaaaggagtttaatttttttgctgataaaccttcaacttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTCTTTGACGATTGAAGAATCTAATTTCAGCCCATGCAATGGTTTGTAGTTT

Basic information

species Vitis vinifera
transcript Vv13s0019g04870.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351018804|gb|FQ425706.1|FQ425706
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAACAAATGGATTAGACAATGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC
EST: gi|18458839|gb|BM437117.1|BM437117
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC
EST: gi|28959731|gb|CB339866.1|CB339866
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAACAAATGGATTAGACAATGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC
EST: gi|26266690|gb|CA817753.1|CA817753
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAACAAATGGATTAGACAATGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC
EST: gi|83276380|gb|DV940388.1|DV940388
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAACAAATGGATTAGACAATGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC
EST: gi|110705270|gb|EE081963.1|EE081963
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC
EST: gi|110730482|gb|EE107614.1|EE107614
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAACAAATGGATTAGACAATGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC
EST: gi|26258614|gb|CA809677.1|CA809677
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAGCAAATGGATTAGACACTGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC
EST: gi|110733026|gb|EE108825.1|EE108825
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAACAAATGGATTAGACAATGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC
EST: gi|87584159|gb|DY473422.1|DY473422
EST:     AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTG                         TCTGGGAAACAAATGGATTAGACAATGGGAGCTGCAGACTAGAGGATTTTC
genomic: AACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgat ... ttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttctgcaaaggagtttaatttttttgctgataaaccttcaacttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTCTTTGACGATTGAAGAATCTAATTTCAGCCCATGCAATGGTTTGTAGTTT
                           tgctgat  putative branch site (score: 3)
                                            cttccat  putative PPT
                tttaatttttttgctg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggctgatatttcctcactgtatttcatatgattttctgcaaaggagtttaatttttttgctgataaaccttcaacttccatgcagTCTGGGAAACAAATGGATTAGACACTGGGAGCTGCAGACTAGAAGATTTTCTTTGACGATTGAAGAATCTAATTTCAGCCCATGCAATGGTTTGTAGTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA