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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaatttgtagtgttgtcttcatcttcttttagtttatatctatatcttccattttataaaaaattttgtggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATT

Basic information

species Vitis vinifera
transcript Vv13s0019g04640.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G35290.1 (Glycine max), 3'ss of exon 9
------------------gtatggaatttgtagtg-ttgtcttcatcttcttttagtttatatctatatcttccattttataaaaaattttg-tggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATT
                  ||      | | | | |  ||| ||   ||| ||||  ||||    | ||| |  |  || | ||   |  | | || |||||||| || || |||||||||||||||  || |||||||||||| || ||||| ||||||||||| |||||  | | | | ||||| || |||||||| ||||
gttagactattcgacatagtgcatcttctattgaggctgtgttgcactttttttcttttagcattttatttaacgattaacaatttacatggatgctaacagAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAGGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATT

upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G32230.1 (Glycine max), 3'ss of exon 9
--------------------gtatggaatttgtagtgttgtcttcatcttcttttagtttatatctatatcttccattttataaaaaattttg-tggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATT
                    | ||    |||  || | ||| ||   ||| ||||  ||||    | ||| |  |  || | ||   |  | | || |||||||| || || || ||||||||||||  || |||||||||||| || ||||||||||||||||| |||||  | | | | ||||| || |||||||| ||||
gttagactattcgacatggtgcatcttcttttgag-gctgtgttacactttttttcttttagcattttatttaacgattaacaatttacatggatgctaacagAGGGTTCTAGAGCATTGTGATGATCTAAATACACAACAAATTATCATGGATGAAATCATGCAATCTGTCGGCACTTTAGCACAGGATCAATATGGAAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349810204|gb|FQ401650.1|FQ401650
EST:     GGCAAGTTGTGTCACTTTCTACCCACCCTTATGGCTGTCGTGTCATTCAG                         AGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGAT
genomic: GGCAAGTTGTGTCACTTTCTACCCACCCTTATGGCTGTCGTGTCATTCAGgtatggaatt ... gtggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGAT
EST: gi|349813014|gb|FQ411254.1|FQ411254
EST:     GGCAAGTTGTGTCACTTTCTACCCACCCTTATGGCTGTCGTGTCATTCAG                         AGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGAT
genomic: GGCAAGTTGTGTCACTTTCTACCCACCCTTATGGCTGTCGTGTCATTCAGgtatggaatt ... gtggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGAT
EST: gi|349820003|gb|FQ404725.1|FQ404725
EST:     GGCAAGTTGTGTCACTTTCTACCCACCCTTATGGCTGTCGTGTCATTCAG                         AGAGTACTGGAACATTGTGGTGATTCAAGTACACAACAAATCATTATGGAT
genomic: GGCAAGTTGTGTCACTTTCTACCCACCCTTATGGCTGTCGTGTCATTCAGgtatggaatt ... gtggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGAT
EST: gi|349813209|gb|FQ411449.1|FQ411449
EST:     GGCAAGTTGTGTCACTTTCTACCCACCCTTATGGCTGTCGTGTCATTCAG                         AGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGAT
genomic: GGCAAGTTGTGTCACTTTCTACCCACCCTTATGGCTGTCGTGTCATTCAGgtatggaatt ... gtggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcttttagtttatatctatatcttccattttataaaaaattttgtggtaacagAGAGTACTGGAACATTGTGATGATTCAAGTACACAACAAATCATTATGGATGAAATCATGCAGTCTGTTTGTATTCTGGCACATGACCAATATGGGAATT
     tttagtttatatctat  TA-rich tract