1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattattttctttcttgatgcttctattccttgtttgttgctatataatatgctgaactttcttttttatttaaactcctattttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG
species | Vitis vinifera |
transcript | Vv13s0019g04470.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAAACTGGGCACTAG TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCCEST: gi|22015287|gb|BQ800321.1|BQ800321
genomic: AAAACTGGGCACTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: TCTGAACA-TTGAAGAGGCCTGAAAACTGGGCACTAG TTGAAAAGGCCAAATATTTCTATATTGCTGG-TTTTTCCTGACTGTGTCCCEST: gi|110425226|gb|EC991608.1|EC991608
genomic: TCTGAACATTTGAAGAGGCCTGAAAACTGGGCACTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCACTAG TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCCEST: gi|110382513|gb|EC946810.1|EC946810
genomic: AAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCACTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
EST: CAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCATTAG TTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
genomic: CAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCACTAGgtattatttt ... attttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCC
tgttgctatataatatgctgaactttcttttttatttaaactcctattttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG
ctcctatttt CT-rich tract
tatataatatgctgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattttctttcttgatgcttctattccttgtttgttgctatataatatgctgaactttcttttttatttaaactcctattttgacagTTGAAAAGGCCAAATATTTCTATATTGCTGGTTTTTTCCTGACTGTGTCCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC