Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttttgttagtttgcatactatgattttcataagaagtatggtggtgctttaattttcttgtgtggttatgctgatgagcatttggtcattttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGATAGCGGAGAACCAGGCAACAAAACCCGTATCAGATGTTCACCCTCCTGA

Basic information

species Vitis vinifera
transcript Vv13s0019g04310.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351051564|gb|FQ450116.1|FQ450116
EST:     TTCAGTACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTTTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|351038272|gb|FQ460964.1|FQ460964
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|351046934|gb|FQ454544.1|FQ454544
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|45771650|gb|CN007502.1|CN007502
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|349809523|gb|FQ414413.1|FQ414413
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|351038723|gb|FQ464589.1|FQ464589
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|110366533|gb|EC930443.1|EC930443
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|349809479|gb|FQ414369.1|FQ414369
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|349811587|gb|FQ409583.1|FQ409583
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|349822732|gb|FQ398119.1|FQ398119
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|349814723|gb|FQ409946.1|FQ409946
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|110426990|gb|EC993420.1|EC993420
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|32459794|gb|CD800968.1|CD800968
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
EST: gi|351028489|gb|FQ444770.1|FQ444770
EST:     TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAG                         GATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA
genomic: TTCAGCACATCAACCCCCCATAGCCCCAAAATTTGATGCGCCTGCCAAAGgtttgtcctt ... ttttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctttaattttcttgtgtggttatgctgatgagcatttggtcattttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGATAGCGGAGAACCAGGCAACAAAACCCGTATCAGATGTTCACCCTCCTGA
                         tgctgat  putative branch site (score: 3)
                                          tcatttt  putative PPT
     ttaattttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttttgttagtttgcatactatgattttcataagaagtatggtggtgctttaattttcttgtgtggttatgctgatgagcatttggtcattttgttaagGATTCTGTGTGTGGAAAGCCAAGAACAGCTCTACAGGGAGTAGCACAATGATAGCGGAGAACCAGGCAACAAAACCCGTATCAGATGTTCACCCTCCTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - gcatact
- - - - - - - - - - - - - - - ataagaa
- - - - - - - - - - - - - - - - - - - - -ggtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttg