Sequence
atgc intronic sequence ATGC exonic sequencegtaagttgaacatatgaatatctgtaccaatttgatcacactcaagaaaaaaatcccatatccaaattgatcatggatggagctctaatgtaatagtaatcgattttcagGCACATTTGTCACCTGGAAGTGAAACAAAATTTGATTTCCGAAATTACATCAAAAGATCGCTTGAAGAGGACTTCAAAGTTGTAGTGAGCATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G26100.1 (Glycine max), 3'ss of exon 8
gtaagttgaacatatgaatatctgtaccaatttgatcacactcaagaaaaaaatcccatatccaaattgatcatggatggagctctaatgtaatagtaatcgattttcagGCACATTTGTCACCTGGAAGTGAAACAAAATTTGATTTCCGAAATTACATCAAAAGATCGCTTGAAGAGGACTTCAAAGTTGTAGTGAGCATCAG
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gtgagtt--atgtttgaaaaaatttcctaattttgacacttttttttggggg----catttcaaaat-------ggaaaga---ctattatatttgtgatta--ttttagGCGCATCTGGCACCGGGAAGTCATGCAAGATTTGATTTCCAAAAGTACATCGAAAGATCACTTGAGGAGGATTTTAAAGTTGTAGTGGGGATAAG
upper sequence: Vv13s0019g04060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G07110.1 (Glycine max), 3'ss of exon 8
gtaagttgaacatatgaatatctgtaccaatttgatcacactcaagaaaaaaatcccatatccaaattgatcatggatggagctctaatgtaatagtaatcgattttcagGCACATTTGTCACCTGGAAGTGAAACAAAATTTGATTTCCGAAATTACATCAAAAGATCGCTTGAAGAGGACTTCAAAGTTGTAGTGAGCATCAG
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-------------gtgagt-tatgatttaaaaagttcctaatttcgagactttttttgtttttgggcatttcaaaatggaaagactaagatacttgttgt-gatttt-agGCGCATTTGGCACCGGGAAGTGATGCAAGATTTGATTTCCAGAAGTACATCGAAAGATCACTTGAGGAGGATTTTAAAGTAGTAGTGGGAATAAG
upper sequence: Vv13s0019g04060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G26090.1 (Glycine max), 3'ss of exon 8
gtaagttgaacatatgaatatctgtaccaatttgatcacactcaaga----aaaaaatcccatatccaaattgatcatggatggagctctaatgtaatagtaatcgattttcagGCACATTTGTCACCTGGAAGTGAAACAAAATTTGATTTCCGAAATTACATCAAAAGATCGCTTGAAGAGGACTTCAAAGTTGTAGTGAGCATCAG
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----------------gtgatctgtacttaattaatatctgtcaaagttttcggcacttttttgttgaaa--gaacataaccaataatgtaacatttaagatatgtgattttagGCACATCTGGCTCCGGGAAGTGATGCAAGATTTGATTTCCAGAAGTACATTAAAAGATCACTTGACGAGGATTTTAAAGTTGTAGTTGGCATAAG
upper sequence: Vv13s0019g04060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G07100.1 (Glycine max), 3'ss of exon 5
gtaagttgaacatatgaatatctgtaccaatttgatcacactcaagaaaaaaatcccatatccaaattgatcatggatggagctctaatgtaatagtaatcgattttcagGCACATTTGTCACCTGGAAGTGAAACAAAATTTGATTTCCGAAATTACATCAAAAGATCGCTTGAAGAGGACTTCAAAGTTGTAGTGAGCATCAG-----
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----------------------------gttttcagcactttttcgttgaaaagac-atatccaat---------aatgtaac----atttaaga-tatgtgatttt-agGCACATCTGGCTCCGGGAAGTGATGCAAGATTTGATTTCCAGAAGTATATCAAAAGATCACTTGATGAAGATTTTAAAGTTGTAGTGGGCATAATGTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatatccaaattgatcatggatggagctctaatgtaatagtaatcgattttcagGCACATTTGTCACCTGGAAGTGAAACAAAATTTGATTTCCGAAATTACATCAAAAGATCGCTTGAAGAGGACTTCAAAGTTGTAGTGAGCATCAG
ctctaat putative branch site (score: 3)
ttttc putative PPT
taatgtaatagtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttgaacatatgaatatctgtaccaatttgatcacactcaagaaaaaaatcccatatccaaattgatcatggatggagctctaatgtaatagtaatcgattttcagGCACATTTGTCACCTGGAAGTGAAACAAAATTTGATTTCCGAAATTACATCAAAAGATCGCTTGAAGAGGACTTCAAAGTTGTAGTGAGCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA