1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtagcatcacattgctttatggttattaacaaataaggctttataatatgccacaaagtatccctatctcttttgctgattctgaaactttttgcttcagtaacttcctatttttattattcatcttaactgtagtgaataattgagtaatgctgtacatatagGCAATGTCTTCACAAGACAGGAAGAAGATTTTACTGGACATAGCCAATGCACTGGAAACAAATGAAGAACTGATTAAAATTGAAAATGATGCTGATGTTG
species | Vitis vinifera |
transcript | Vv13s0019g02360.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCGCACGTGAAATGGCAGTTGCAGCAAGGGAAAGTTCCAGGCGGCTTCAG GCAATGTCTTCACAAGACAGGAAGAAGATTTTACTGGACATAGCCAATGCAEST: gi|110701185|gb|EE078493.1|EE078493
genomic: GCGCACGTGAAATGGCAGTTGCAGCAAGGGAAAGTTCCAGGCGGCTTCAGgtagcatcac ... gtacatatagGCAATGTCTTCACAAGACAGGAAGAAGATTTTACTGGACATAGCCAATGCA
EST: GCGCACGTGAAATGGCAGTTGCAGCAAGGGAAAGTTCCAGGCGGCTTCAG GCAATGTCTTCACAAGACAGGAAGAAGATTTTACTGGACATAGCCAATGCAEST: gi|110725458|gb|EE101979.1|EE101979
genomic: GCGCACGTGAAATGGCAGTTGCAGCAAGGGAAAGTTCCAGGCGGCTTCAGgtagcatcac ... gtacatatagGCAATGTCTTCACAAGACAGGAAGAAGATTTTACTGGACATAGCCAATGCA
EST: GCGCACGTGAAATGGCAGTTGCAGCAAGGGAAAGTTCCAGGCGGCTTCAG GCAATGTCTTCACAAGACAGGAAGAAGATTTTACTGGACATAGCCAATGCA
genomic: GCGCACGTGAAATGGCAGTTGCAGCAAGGGAAAGTTCCAGGCGGCTTCAGgtagcatcac ... gtacatatagGCAATGTCTTCACAAGACAGGAAGAAGATTTTACTGGACATAGCCAATGCA
atttttattattcatcttaactgtagtgaataattgagtaatgctgtacatatagGCAATGTCTTCACAAGACAGGAAGAAGATTTTACTGGACATAGCCAATGCACTGGAAACAAATGAAGAACTGATTAAAATTGAAAATGATGCTGATGTTG
tcttaac putative branch site (score: 2)
tattattcatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcatcacattgctttatggttattaacaaataaggctttataatatgccacaaagtatccctatctcttttgctgattctgaaactttttgcttcagtaacttcctatttttattattcatcttaactgtagtgaataattgagtaatgctgtacatatagGCAATGTCTTCACAAGACAGGAAGAAGATTTTACTGGACATAGCCAATGCACTGGAAACAAATGAAGAACTGATTAAAATTGAAAATGATGCTGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT