Sequence
atgc intronic sequence ATGC exonic sequence...tcctttccttctgttttattattcttagtttggttgttcatgtgtaaggttatcatgataaggtttaaagtttgtcttattgtgatattgttttggttagTGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCCTTACTGGGAATTCAGATAGAGAGAGTTGCTGCAGGCCTGTGGCACACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G03870.1 (Glycine max), 3'ss of exon 7
tcctttccttctgttttattattcttagtttggttgttcatgtgtaaggttatcatgataaggtttaaagtttgtc-----ttattgtgatattgttttggtta-gTGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCCTTACTGGGAATTCAGATAGAGAGAGTTGCTGCAGGCCTGTGGCACACTG
|| || | |||| || || || | | | ||| |||| ||| | || || | ||| ||| || |||| |||| | |||||||||||||||||| |||||||| || || || | ||| |||||||||||| |||| ||||| |||||| ||||||||||||| |||||||| ||||
-----ctgttactttacaatatttatatttctattcgctctctttgttgttg-catgctaatgcttgttaattattctaaattaatgtcatcttgtgttggaaaagTGTGGGCAAGGAAGTACAGATGATGAACTGAGCCCGAGTTGCGTATCTTCCTTATTGGGTATTCAAATAGAGGGAGTTGCTGCAGGACTGTGGCATACTG
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G41810.2 (Glycine max), 3'ss of exon 7
tcctttccttctgttttattattcttagtttggttgttcatgtgtaaggttat-catgataaggtttaaagt-ttgtcttattgtgatattgttt--tggttagTGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCCTTACTGGGAATTCAGATAGAGAGAGTTGCTGCAGGCCTGTGGCACACTG
| || | |||| || || | | | ||| ||| | || |||| | | | | | | | || ||| || |||||| | ||||||||||||||| ||| |||||||| ||||| |||||||||||||||||| || |||| || || |||||| || |||||||||| |||||||| || |
----attctattcctttacaatatttcatctttcttgtcacctgttggtcaatgcatgcttttgctcattatactttatttatgtcatcttgttttttatcaagTGTGGGCAAGGAATTACCGATGATGAACTAAGCCCAACTTGTGTATCTTCCCTATTGGGTATCCACATAGAGGGAATTGCTGCAGGACTGTGGCATACAG
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G34470.1 (Glycine max), 3'ss of exon 7
--tcctttccttctgttttattattcttagtttggttgttcatgtgtaaggttatcatgataaggtttaaagtttgtcttattgtgatattgttttggtta-gTGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCCTTACTGGGAATTCAGATAGAGAGAGTTGCTGCAGGCCTGTGGCACACTG
| || | | | | | || | | | | | ||||| || | | || ||| |||| | | | ||| ||| || ||||||||| | |||||||||||||||||| |||||||| |||| || | ||| |||||||||||| |||| |||| |||||| ||||||||||||| |||||||| ||||
ttactttacaatatttatctttctattcactctctttgttgctgcatgctaatgct-tgttaatttttata--ctatattaatgtcatcttgttttggaaaagTGTGGGCAAGGAAGTACAGATGATGAATTAAGCCCGAATTGCGTATCTTCCTTATTGGGTATTCGAATAGAGGGAGTTGCTGCAGGACTGTGGCATACTG
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G55580.1 (Arabidopsis thaliana), 3'ss of exon 7
----tcctttccttctgttttattattcttagtttggttgttcatgtgtaaggttatcatgataaggtttaaagtttgtcttattgtgatattgttttggttagTGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCCTTACTGGGAATTCAGATAGAGAGAGTTGCTGCAGGCCTGTGGCACACTG
|| | | |||| || || | || | | |||| | | | | ||| | || ||| | ||||| | | ||| | || ||||||| ||||||||||| |||||||| |||||||| || ||||| || || || ||||||| | ||||| ||| |||||||| || ||||||||
attgaaactttcatttgttatac-atccgcagctaatattttcactt-tctgttgggtatgtggaagtaattgattttttttatttt--tgttgctctgtgaagTGTGGCCAAGGAAGTACAGATGATGAACTAAGTCCTACATGTGTGTCGTCTTTGTTGGGAATCCGAATAGAAGAAGTGGCTGCAGGTCTATGGCACACGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110363998|gb|EC927635.1|EC927635EST: ATGCTGGAGCACTACTTATGTTTGGTTGGGGACTGTATGGACAG TGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCC
genomic: ATGCTGGAGCACTACTTATGTTTGGTTGGGGACTGTATGGACAGgtaagttatt ... ttttggttagTGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCC
EST:
gi|110381714|gb|EC935198.1|EC935198EST: ATGCTGGAGCACTACTTATGTTTGGTTGGGGACTGTATGGACAG TGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCC
genomic: ATGCTGGAGCACTACTTATGTTTGGTTGGGGACTGTATGGACAGgtaagttatt ... ttttggttagTGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaggttatcatgataaggtttaaagtttgtcttattgtgatattgttttggttagTGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCCTTACTGGGAATTCAGATAGAGAGAGTTGCTGCAGGCCTGTGGCACACTG
ttgtttt CT-rich tract
tttaaagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcctttccttctgttttattattcttagtttggttgttcatgtgtaaggttatcatgataaggtttaaagtttgtcttattgtgatattgttttggttagTGTGGGCAAGGAAGTACTGATGATGAGCTAAGTCCAACTTGTGTATCTTCCTTACTGGGAATTCAGATAGAGAGAGTTGCTGCAGGCCTGTGGCACACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
-cctttcc
- - - - - - - - - - - - - - - tggttgt
- - - - - - - - - - - - - - - - - - - catgtgt