1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgacattgttttgggtaggatgaaaatggtgtctctgtgtaaaatggctatgtcgagtgtgttgtcactttaactaatatcatatggctttatctccagGTCCCCAGATCCTCCCACTTTTGATTCAGGGTTTTCTGATGCCACACCTGATCCTTCTCCACTGACCAATTTGGGCAATCAAGTTGAAAAAATTCATGAT
species | Vitis vinifera |
transcript | Vv13s0019g01670.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAGATCCACCTTTCTTGTTACCATCTGACACATCTCAGCTTTTAACCAG GTCCCCAGATCCTCCCACTTTTGATTCAGGGTTTTCTGATGCCACACCTGAEST: gi|26264539|gb|CA815602.1|CA815602
genomic: GAAGATCCACCTTTCTTGTTACCATCTGACACATCTCAGCTTTTAACCAGgtaatgcaaa ... ttatctccagGTCCCCAGATCCTCCCACTTTTGATTCAGGGTTTTCTGATGCCACACCTGA
EST: GAAGATCCACCTTTCTTGTTACCATCTGACACATCTCAGCTTTTAACCAG GTCCCCAGATCCTCCCACTTTTGATTCAGGGTTTTCTGATGCCACACCTGA
genomic: GAAGATCCACCTTTCTTGTTACCATCTGACACATCTCAGCTTTTAACCAGgtaatgcaaa ... ttatctccagGTCCCCAGATCCTCCCACTTTTGATTCAGGGTTTTCTGATGCCACACCTGA
tggctatgtcgagtgtgttgtcactttaactaatatcatatggctttatctccagGTCCCCAGATCCTCCCACTTTTGATTCAGGGTTTTCTGATGCCACACCTGATCCTTCTCCACTGACCAATTTGGGCAATCAAGTTGAAAAAATTCATGAT
aactaat putative branch site (score: 2)
ctttatctcc putative PPT
tttaactaatatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgacattgttttgggtaggatgaaaatggtgtctctgtgtaaaatggctatgtcgagtgtgttgtcactttaactaatatcatatggctttatctccagGTCCCCAGATCCTCCCACTTTTGATTCAGGGTTTTCTGATGCCACACCTGATCCTTCTCCACTGACCAATTTGGGCAATCAAGTTGAAAAAATTCATGAT
- - - - - - -gggtagg
- - - - - - - - - - atgaaaa
- - - - - - - - - - - - - -tggtgtc
- - - - - - - - - - - - - - - - - - - - - -aatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatggct