1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaaggtagctgcataaatttgctccatatatagtttccttaattttgagctgaattgtctctcctgatatttaccaacagtatttgttttagtggcacagGTGGTGGAACTTACTGTGCTGTTGCATCTCTCCAACTGATGGGATTCATTGAACATGATATTTTGTCTAAAAGCTCATCATCTTCCATAATAAACGTGCC
species | Vitis vinifera |
transcript | Vv13s0019g01470.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATATGATGGTGGCTTTGGGTTGATTCCTGGTTCAGAATCCCACG GTGGTGGAACTTACTGTGCTGTTGCATCTCTEST: gi|33407309|gb|CF212936.1|CF212936
genomic: TCATATGATGGTGGCTTTGGGTTGATTCCTGGTTCAGAATCCCACGgtgagtggat ... agtggcacagGTGGTGGAACTTACTGTGCTGTTGCATCTCT
EST: TCATATGATGGTGGCTTTGGGTTGATTCCTGGTTCAGAATCCCACG GTGGTGGAACTTACTGTGCTGTTGCATCTCTCCAACTGATGGGATTCATTGEST: gi|110713125|gb|EE088770.1|EE088770
genomic: TCATATGATGGTGGCTTTGGGTTGATTCCTGGTTCAGAATCCCACGgtgagtggat ... agtggcacagGTGGTGGAACTTACTGTGCTGTTGCATCTCTCCAACTGATGGGATTCATTG
EST: TCATATGATGGTGGCTTTGGGTTGATTCCTGGTTCAAAATCCCACG GTGGTGGAACTTACTGTGCTGTTGCATCTCTCCNACTGATGGGATTCATTG
genomic: TCATATGATGGTGGCTTTGGGTTGATTCCTGGTTCAGAATCCCACGgtgagtggat ... agtggcacagGTGGTGGAACTTACTGTGCTGTTGCATCTCTCCAACTGATGGGATTCATTG
tgagctgaattgtctctcctgatatttaccaacagtatttgttttagtggcacagGTGGTGGAACTTACTGTGCTGTTGCATCTCTCCAACTGATGGGATTCATTGAACATGATATTTTGTCTAAAAGCTCATCATCTTCCATAATAAACGTGCC
tcctgat putative branch site (score: 3)
tatttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaggtagctgcataaatttgctccatatatagtttccttaattttgagctgaattgtctctcctgatatttaccaacagtatttgttttagtggcacagGTGGTGGAACTTACTGTGCTGTTGCATCTCTCCAACTGATGGGATTCATTGAACATGATATTTTGTCTAAAAGCTCATCATCTTCCATAATAAACGTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
aaaggta
- - - - ctgcata
- - - - - - - - - -tgctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaaca