Sequence
atgc intronic sequence ATGC exonic sequence...aacaattatagacatgatagtgagttatcagctgttaatattttatctcatatacctattttatttcatgcagcaatgctttttatttttaaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGATTTGGTTCAAAGATTTGGCTCGGATGCAGTAAGATACTTTTTCCTTAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 3'ss of exon 7
---aacaattatagacatgatagtgagttatcagctgttaatattttatctcatataccta-ttttatttcatgcagcaatgctttttatttttaaaa-ttttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGATTTGGTTCAAAGATTTGGCTCGGATGCAGTAAGATACTTTTTCCTTAGGG
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gtgaaca--taaagaactgtttacaggttctc---tgtttgctacttatctcatccagtcacttttatttcatgcagcaatgctttttattttgaaaaattttagGATGGCATGAAGATGGGAAAATCATTAGGCAACACACTTGAACCAAAGGATCTGGTAAACAGATTTGGAGTAGACTCTGTTAGGTACTTCTTCTTGCGGG
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G029055_T01 (Zea mays), 3'ss of exon 7
-aacaattatagacatgatagtgagttatcagctgttaatattttatctc-atatacctattttatttcatgcagcaatgctttttatttttaaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGATTTGGTTCAAAGATTTGGCTCGGATGCAGTAAGATACTTTTTCCTTAGGG
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gagcaacaa-atgcatgtagattcccagtcacctttta-tgttttatctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G23250.1 (Glycine max), 3'ss of exon 7
aacaattatagacatgatagtgagttatcagctgttaatat-tttatctcatataccta-ttttatttcatgcagcaatgctttttatttttaaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGATTTGGTTCAAAGATTTGGCTCGGATGCAGTAAGATACTTTTTCCTTAGGG
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actaaatttggcaatttt--tgacttagcaaagttttataaatctatttcttatatttaatttcatttcatgcagcaatgctttttattttgaaaatgttagGATGGAATGAAGATGGGCAAGTCACTAGGGAATATACTTGAACCAAACGATTTGGTTAATAAATTTGGGACAGATGCAGTTAGATACTTCTTCCTCAGAG
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G43550.1 (Glycine max), 3'ss of exon 7
aacaattatag-acatgatagtgagttatcagctgttaatattttatctcatataccta-ttttatttcatgcagcaatgctttttatttttaaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGATTTGGTTCAAAGATTTGGCTCGGATGCAGTAAGATACTTTTTCCTTAGGG
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atgggtcttaggaaaagctaggaaacta--aatttttataaacctgtttcttatatttaatttcatttcatgcagcaatgctttttattttgaaaatgttagGATGGCATGAAGATGGGCAAGTCACTAGGGAATACACTTGAACCAAACGATTTGGTTAATAAATTTGGGACAGATGCAGTTAGATACTTCTTTGTCAGAG
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G55400.2 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------aacaattatagacatgatagtg--agttatcagctgttaatattttatctcatatacctattttatttca-tgcagcaatgctttttatttttaaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGATTTGGTTCAAAGATTTGGCTCGGATGCAGTAAGATACTTTTTCCTTAGGG
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gtacatgaccaaaaaactcttgatgctgcatattccctgttcagtgttgagatcttgttcttgccaacttcctttagtcatgttaacatgtgagaggaaaattggatttttcttttctgatatcccatagttatcaaattatagGATGGAATGAAGATGGGAAAATCGTTGGGGAATACTCTAGAACCGTTTGAGTTGGTTCAGAAATTTGGGCCAGATGCCGTGAGGTATTTCTTCCTACGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30255117|gb|CB971564.1|CB971564EST: CTGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAA GATGGAATGAAGATGGGAAAGTCATTGGGGAATACACTTGAACCATATGAT
genomic: CCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAAgtattcgact ... aaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctcatatacctattttatttcatgcagcaatgctttttatttttaaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGATTTGGTTCAAAGATTTGGCTCGGATGCAGTAAGATACTTTTTCCTTAGGG
agcaatgctttttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacaattatagacatgatagtgagttatcagctgttaatattttatctcatatacctattttatttcatgcagcaatgctttttatttttaaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGATTTGGTTCAAAGATTTGGCTCGGATGCAGTAAGATACTTTTTCCTTAGGG
aacaatt
- - - - - gacatga
- - - - - - - - - - - - - - cagctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca