1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agcttttgctgcattttaacctttttcacatcagtcttgtgtctttggagttgttaaattgctggggttggccttcacatgtttgttttgtactttgcagGTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGAAATGAGAATTTTGGTGGAGGTTTGTGGGGATGACACATGAATCTTTTGT
species | Vitis vinifera |
transcript | Vv12s0142g00670.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAAAATCACTCAACTGATTTTCATAATGGTGATTGGGGCACTAGGAGAG GTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGAEST: gi|33408485|gb|CF214112.1|CF214112
genomic: CTAAAATCACTCAACTGATTTTCATAATGGTGATTGGGGCACTAGGAGAGgtaaaatatt ... tactttgcagGTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGA
EST: CTAAAATCACTCAACTGATTTTCATAATGGTGATTGGGGCACTAGGAGAG GTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGAEST: gi|33408770|gb|CF214397.1|CF214397
genomic: CTAAAATCACTCAACTGATTTTCATAATGGTGATTGGGGCACTAGGAGAGgtaaaatatt ... tactttgcagGTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGA
EST: CTAAAATCACTCAACTGATTTTCATAATGGTGATTGGGGCACTAGGAGAG GTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATACCAAGAAATGAEST: gi|110694949|gb|EE072406.1|EE072406
genomic: CTAAAATCACTCAACTGATTTTCATAATGGTGATTGGGGCACTAGGAGAGgtaaaatatt ... tactttgcagGTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGA
EST: CTAAAATCACTCAACTGATTTTCATAATGGTGATTGGGGCACTAGGAGAG GTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGA
genomic: CTAAAATCACTCAACTGATTTTCATAATGGTGATTGGGGCACTAGGAGAGgtaaaatatt ... tactttgcagGTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGA
tggagttgttaaattgctggggttggccttcacatgtttgttttgtactttgcagGTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGAAATGAGAATTTTGGTGGAGGTTTGTGGGGATGACACATGAATCTTTTGT
ttgttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttttgctgcattttaacctttttcacatcagtcttgtgtctttggagttgttaaattgctggggttggccttcacatgtttgttttgtactttgcagGTGTAAGGACAGAAAAACAGAGTTTGAAGGAAATGAAATAGCAAGAAATGAAATGAGAATTTTGGTGGAGGTTTGTGGGGATGACACATGAATCTTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - ctgcatt
- - - - - - - - - - - - - cacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcac