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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG

Basic information

species Vitis vinifera
transcript Vv12s0121g00080.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 7
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggactaccccagcctacaggttactaaactttctgt-ttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG
        ||  | ||  | |||||       |  |  | |       | | |  ||   ||    |||   | ||||   | || | |  | || |||||||||| |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||
------gtaagcctaccatctttggg-----cttaacattt-------aatgctacaagatagtatttatctagctttgaatatttttaacttctctgcagGATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGG

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 7
----------------tgggtgt-caaatccacatt----ttttgga--accaattcgatgtcttggtgggactaccccagcctacagg----ttactaaactttctgtt-tctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG
                ||||  |   | |  |  ||    |  ||||  |  ||||  |    ||      |||  | ||    ||| |    |||  || ||||      | | |  | || |||||||||| |||||| | |||||||| |||||||||||||  || || ||||||||||| || ||
gtaagcctgtcatctttgggcttatcatttgatgttaccatcatggattattaattataataattctaattactttctcaagtaacaagatatttatcaagcttttaaaagttttaacttctgtgcagGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGG

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 7
tgggtgtcaaatccacattttttggaacca--attcgatgt--cttggtgggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG
        ||  |  |    |||||    |  ||| |||||  |  | | | | |   | ||| |  |  ||  | ||  ||||||              ||||||||  |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||
------gtaagcctgccacctttggtcttaccatttgatgttaccagatagtatttatctagctttgaaattttttaaacttctgt--------------gcagGATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGG

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 7
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG
         || | |  || |||      ||||| |||| |   |  ||       |     ||   |  |||| |   |||||    |||    ||||||| | |||||| |||||||||||||| ||||| || || ||||||||||||| ||| || ||
-------gtaagcta-gttgtttcactgtaattcaatgtatacatttga-------aataatcattatgttaaattgattgtttt--gttta---tgcagGACACCCCATTGGTTATCGAGTGCTTAGATTTTAACACCAGTGGGAATCATGAACTTATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG
                      tactaaa  putative branch site (score: 1)
                             ctttctgtttctcatt  CT-rich tract
                     ttactaaa  TA-rich tract