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...gctttactaatctagtgttagatcaaagattatcctacttgggaaataagcatgtctacacatggtccgaaaccgtttgttaatgtaaaatatcttacagATGAGGGGTGGAAGGAAGCCAGATGGAGTTTGCCTTGTTGTTGGTTCTTGTGCACGTGGTTTTACAAATAACTCAACAAGTGATGTCATATACAGTAGTT
species | Vitis vinifera |
transcript | Vv12s0059g01150.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACGTCTTCTCATCGATGCTATGGGGAATTTTTCCCCTGTGGTAAAACAG ATGAGGGGTGGAAGGAAGCCAGATGGAGTTTGCCTTGTTGTTGGTTCTTGTEST: gi|26258630|gb|CA809693.1|CA809693
genomic: CACGTCTTCTCATCGATGCTATGGGGAATTTTTCCCCTGTGGTAAAGCAGgtctaatttt ... tatcttacagATGAGGGGTGGAAGGAAGCCAGATGGAGTTTGCCTTGTTGTTGGTTCTTGT
EST: CACGTCTTCTCATCGATGCTATGGGGAATTTTTCCCCTGTGGTAAAACAG ATGAGGGGTGAAAGGAAGCCAGATGGAGTTTTGCCTTGTTGTTGGTTCTTGEST: gi|32271134|gb|CD720293.1|CD720293
genomic: CACGTCTTCTCATCGATGCTATGGGGAATTTTTCCCCTGTGGTAAAGCAGgtctaatttt ... tatcttacagATGAGGGGTGGAAGGAAGCCAGATGGAGTTT-GCCTTGTTGTTGGTTCTTG
EST: CACGTCTTCTCATCGATGCTATGGGGAATTTTTCCCCTGTGGTAAAACAG ATGAGGGGTGGAAGGAAGCCAGATGGAGTTTGCCTTGTTGTTGGTTCTTGT
genomic: CACGTCTTCTCATCGATGCTATGGGGAATTTTTCCCCTGTGGTAAAGCAGgtctaatttt ... tatcttacagATGAGGGGTGGAAGGAAGCCAGATGGAGTTTGCCTTGTTGTTGGTTCTTGT
ataagcatgtctacacatggtccgaaaccgtttgttaatgtaaaatatcttacagATGAGGGGTGGAAGGAAGCCAGATGGAGTTTGCCTTGTTGTTGGTTCTTGTGCACGTGGTTTTACAAATAACTCAACAAGTGATGTCATATACAGTAGTT
tgttaat putative branch site (score: 3)
tttgttaatgtaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttactaatctagtgttagatcaaagattatcctacttgggaaataagcatgtctacacatggtccgaaaccgtttgttaatgtaaaatatcttacagATGAGGGGTGGAAGGAAGCCAGATGGAGTTTGCCTTGTTGTTGGTTCTTGTGCACGTGGTTTTACAAATAACTCAACAAGTGATGTCATATACAGTAGTT
- - - - - - - - - - -atcaaaga
- - - - - - - - - - - - - - - - -cctactt
- - - - - - - - - - - - - - - - - - - - -ggaaata
- - - - - - - - - - - - - - - - - - - - - - - - -gcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtaaaa