1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtcctggtcacaaaccatagagtgctgcttagttatgtataattcctatgctttatagttgaacactacttaatttgcttgaactcatggtctgtacagGATGACTTTGATAACATTACTCGTTTTCTGGTCCTTGCAAGGGATCCTATAATTCCAAGAACCAATAAGCTCTTTAAG
species | Vitis vinifera |
transcript | Vv12s0059g00750.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCAGAAATCTATGGGCTTAACATACTTGCAGAAAGAATCCAG GATGACTTTGATAACATTACTCGTTTTCTGGTCCTTGCAAGGGATCCTATAEST: gi|51052564|gb|CO819624.1|CO819624
genomic: GCAGAAATCTATGGGCTTAACATACTTGCAGAAAGAATCCAGgtaactcatt ... gtctgtacagGATGACTTTGATAACATTACTCGTTTTCTGGTCCTTGCAAGGGATCCTATA
EST: TTAACATACTTGCAGAAAGAATCCAG GATGACTTTGATAACATTACTCGTTTTCTGGTCCTTGCAAGGGATCCTATAEST: gi|110418797|gb|EC984974.1|EC984974
genomic: TTAACATACTTGCAGAAAGAATCCAGgtaactcatt ... gtctgtacagGATGACTTTGATAACATTACTCGTTTTCTGGTCCTTGCAAGGGATCCTATA
EST: CAGAAATCTATGGGCTTAACATACTTGCAGAAAGAATCCAG GATGACTTTGATAACATTACTCGTTTTCTGGTCCTTGCAAGGGATCCTATA
genomic: CAGAAATCTATGGGCTTAACATACTTGCAGAAAGAATCCAGgtaactcatt ... gtctgtacagGATGACTTTGATAACATTACTCGTTTTCTGGTCCTTGCAAGGGATCCTATA
cctatgctttatagttgaacactacttaatttgcttgaactcatggtctgtacagGATGACTTTGATAACATTACTCGTTTTCTGGTCCTTGCAAGGGATCCTATAATTCCAAGAACCAATAAGCTCTTTAAG
acttaat putative branch site (score: 4)
tacttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcctggtcacaaaccatagagtgctgcttagttatgtataattcctatgctttatagttgaacactacttaatttgcttgaactcatggtctgtacagGATGACTTTGATAACATTACTCGTTTTCTGGTCCTTGCAAGGGATCCTATAATTCCAAGAACCAATAAGCTCTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - -caaacca
- - - - - - - - - - - - - tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactca