Sequence
atgc intronic sequence ATGC exonic sequence...gatactctagcttatgtgttaaagtgacagacatgtattgatgtcctttttgggaagtgtctaacttctgtacatctaatggggcatctttccttgtcagCTGCACCAATTAATGCCATCTGTGGTTACCTGCCTTGTTGCAAAACGAATTGGAAATAGACTTGCAGACAACCACTGGGAACTTCGAGACTTCACAGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G52720.1 (Glycine max), 3'ss of exon 3
gatactctagcttatgtgttaaagtgaca---gacatgtattgatgtcctttttgggaagtgtctaacttctgtacatctaatggggcatctttccttgtcagCTGCACCAATTAATGCCATCTGTGGTTACCTGCCTTGTTGCAAAACGAATTGGAAATAGACTTGCAGACAACCACTGGGAACTTCGAGACTTCACAGCAA
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-aaaggcca-tttagatcttagtatgttacttggttcacatgaatgagttaatgtgaaaccatctctttacc-tctttttctttctgtttttgcatgcttcagCTACACCAGTTGATGCCATCTGTTGTGACCTGCCTTGTTGCTAAAAGGTTGGGCAGTAGGTTGGCAGACAACCACTGGGAACTTAGAGACTCTACGGCTA
upper sequence: Vv12s0059g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G10220.1 (Glycine max), 3'ss of exon 7
gatactctagcttatgtgttaaagtgaca---gacatgtattgatgtcctttttgggaagtgtctaacttctgtacatctaatggggcatctttccttg--tcagCTGCACCAATTAATGCCATCTGTGGTTACCTGCCTTGTTGCAAAACGAATTGGAAATAGACTTGCAGACAACCACTGGGAACTTCGAGACTTCACAGCAA
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-aaagccca-tttagatttcagtatgttacttgcttcacatgaatgagttaatgtgaaaccatct---ctttacccctttttctttctgtttttgcatgcttcagCTACACCAGTTGATGCCATCTGTTGTGACTTGCCTTGTTGCTAAAAGGTTGGGCACTAGGTTGGCAGACAACCACTGGGAACTTAGAGACTTTACGGCTC
upper sequence: Vv12s0059g00300.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G04950.1 (Arabidopsis thaliana), 3'ss of exon 8
gatactctagcttatgtgttaaagtgacagacatgtattgatgtcctt-tttgggaagtgtctaacttctgtacatctaatggggcatctttccttg---tcagCTGCACCAATTAATGCCATCTGTGGTTACCTGCCTTGTTGCAAAACGAATTGGAAATAGACTTGCAGACAACCACTGGGAACTTCGAGACTTCACAGCAA
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tgtattg-agattatgt---aaaccagccttgggataatgagttggttgtttgagcaatgtttcataaccatgaagctgagtgaactttttcttttggtgccagCTGCACCAGTTGATGCCATCTGTTGTAACATGCCTTGTATCAAGAAAGCTTGGAAATAGATTTGCTGACAACCACTGGGAACTCAGAGATTTTGCGGCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351014973|gb|FQ444262.1|FQ444262EST: GTGTGGTTTGGAGTCTTCTTCAGAATCCTCACATACACATAGAACCTTAT CTGCACCAATTAATGCCATCTGTGGTTACCTGCCTTGTTGCAAAACGAATT
genomic: GTGTGGTTTGGAGTCTTCTTCAGAATCCTCACATACACATAGAACCTTATgtaagttggc ... tccttgtcagCTGCACCAATTAATGCCATCTGTGGTTACCTGCCTTGTTGCAAAACGAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttttgggaagtgtctaacttctgtacatctaatggggcatctttccttgtcagCTGCACCAATTAATGCCATCTGTGGTTACCTGCCTTGTTGCAAAACGAATTGGAAATAGACTTGCAGACAACCACTGGGAACTTCGAGACTTCACAGCAA
catctttccttgtc CT-rich tract
atctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gatactctagcttatgtgttaaagtgacagacatgtattgatgtcctttttgggaagtgtctaacttctgtacatctaatggggcatctttccttgtcagCTGCACCAATTAATGCCATCTGTGGTTACCTGCCTTGTTGCAAAACGAATTGGAAATAGACTTGCAGACAACCACTGGGAACTTCGAGACTTCACAGCAA
- - ctctagc
- - - - - - - - - - aaagtga
- - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgg