Sequence
atgc intronic sequence ATGC exonic sequence...tataaaactgactttaaatgtgtttagggtaatggcagattcaaatgttttataaaagaactaatgcacaattattttctgatggtttaacatgtttcagCTGTTGGGAGATATGTTACTAGATCGTTCAAATTCTGCTGTGATGATCCGCTATGTGAGCTCACTGGATAACATGAGGATCCTGATGAATCTTCTAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g00410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G066051_T01 (Zea mays), 3'ss of exon 7
-------tataaaactgactttaaatgtgtttagggtaatggcagattcaaatgttttataaaagaactaatgcacaattattttctgatggtttaacatgtttcagCTGTTGGGAGATATGTTACTAGATCGTTCAAATTCTGCTGTGATGATCCGCTATGTGAGCTCACTGGATAACATGAGGATCCTGATGAATCTTCTAAGA
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ttacttttttcacacggatctgctatgcac---ggatgttgtagaa--cagagggagcaaaaaattttttat-caagattctcatgtaatgatctttt-cgtttcagTTGTTGGGAGATATGCTGCTGGATAGATCAAATGCTGCAGTCATGATGCGCTATGTTAGCTCCAAAGACAACCTTATGATTTTGATGAATCTCTTAAGG
upper sequence: Vv12s0057g00410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G00940.1 (Glycine max), 3'ss of exon 7
----------------------tataaaact---gactttaaatgtgttt--agggtaatggcagattcaaatgttttataaaaga-actaatgcacaattattttctgatggt-------ttaacatgtttcagCTGTTGGGAGATATGTTACTAGATCGTTCAAATTCTGCTGTGATGATCCGCTATGTGAGCTCACTGGATAACATGAGGATCCTGATGAATCTTCTAAGA
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gtataaataatttaatctgtggtagattcctttaagtctcaaattcattttaacatcaattgtccattttaactgcttgcattagtcacaattttttatccatttccccattgtaatcaaattaatatgttacagTTATTGGGGGATATGTTATTGGATCGCTCGAATGCTGCTGTAATGGTCCAGTATGTGAGCTCGTTCGATAATATGAGGATCCTCATGAATCTCTTAAGA
upper sequence: Vv12s0057g00410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G47710.1 (Glycine max), 3'ss of exon 7
tataaaactgactttaaatgtgtttagggtaatggcagattcaaatgttttataaaagaactaa--tgcacaattattttc-tgatggtttaacatgtttcagCTGTTGGGAGATATGTTACTAGATCGTTCAAATTCTGCTGTGATGATCCGCTATGTGAGCTCACTGGATAACATGAGGATCCTGATGAATCTTCTAAGA
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-ttgatgttgattgtgctgatgattata-taatggtagcggtgtat-tttaaacacagcactaagacgtactgtcctaatcatagtaatcaaatatgttacagTTATTGGGGGATATGCTATTGGATCGCTCGAATGCTGCGGTAATGGTCCAGTATGTGAGCTCGTTGGATAATATGAGGATCCTCATGAATCTCTTAAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttttataaaagaactaatgcacaattattttctgatggtttaacatgtttcagCTGTTGGGAGATATGTTACTAGATCGTTCAAATTCTGCTGTGATGATCCGCTATGTGAGCTCACTGGATAACATGAGGATCCTGATGAATCTTCTAAGA
tataaaagaactaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tataaaactgactttaaatgtgtttagggtaatggcagattcaaatgttttataaaagaactaatgcacaattattttctgatggtttaacatgtttcagCTGTTGGGAGATATGTTACTAGATCGTTCAAATTCTGCTGTGATGATCCGCTATGTGAGCTCACTGGATAACATGAGGATCCTGATGAATCTTCTAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-ataaaac
- - - - - - - - - - - - - - - aatggca
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcac