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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagctttcttcgccttctgtctgcacattttgggattgttttactatatcttgataagaaaaaggtgcactcatataattttctgaaatttctggggctctcagGTGGGCGTCGGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTAACTGTCTT

Basic information

species Vitis vinifera
transcript Vv12s0055g00590.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G151567_T01 (Zea mays), 3'ss of exon 7
gtaagagctttcttcgccttctgtctgcacattttgggattgttttactatatcttgataagaaaaaggtgcactcatataattttctgaaatttctggggctctcagGTGGGCGTCGGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTAACTGTCTT
                      ||  || || |   | |         ||| ||   ||   | |      ||| ||  ||   |  || | ||||| | ||   ||| ||||| ||||| || ||  |||||||||| ||||||||||||||||||||   | |  || |    ||  |
----------------------gtaggctcaatacagcagcaacaagttatttcc-aatgtaacat-----cacacacttagcgtaatgtattttcttgtgcatgcagCTGGGCATCGGACAACGACTTCACAGGAAAAATACCTGATTTCATTGGGAACCTGACTCAGTTGGAAGTTCT

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G25600.1 (Glycine max), 3'ss of exon 6
gtaagagctttcttcgccttctgtctgcacattttgggattgttttacta-tatcttgataagaaaaaggtgcactcatataattttctgaaattt-ctggggctctcagGTGGGCGTCGGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTAACTGTCTT
                      ||  | | |||      |  |    ||| |||  | |||    |||   | |||  ||||||  |   |||||| |||    | | ||  | || || || |  |||||||||||||| ||||| || ||||| ||||||||||| |||||      |||
----------------------gtaag-atattcctaactaatgcacctaatatgataatagactaaaaaggaacttctataatgataaaaaattttctgttcattttagAGGAGCTTCAGACACGGAACTCACAGGAAAAATACCAGACTTCATAGGGAATTGGTCTAAGCTTCAAACCTT

upper sequence: Vv12s0055g00590.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G25590.1 (Glycine max), 3'ss of exon 6
gtaagagctttcttcgccttctgtctgcacattttgggattgttttact--atatcttgataagaaaaaggtgcactcatataattttctgaa--atttctggggctctcagGTGGGCGTCGGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTAACTGTCTT
                      ||  | | |||       |  | ||    ||||  | |||    |||   | |||  || |||  |   ||  ||||||     | | || ||||| || || |  |||||||||||||| ||||| || ||||| ||||||||||| |||||      |||
----------------------gtaag-atattcctaatctaatgtatctaatatgataatagagtaaaaaggaacttctacaatgataaaaaaaatttctattcattttagATGGGCTTCAGACACGGAACTCACAGGAAAAATACCGGACTTCATAGGGAATTGGTCTAAGCTTCAATCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgataagaaaaaggtgcactcatataattttctgaaatttctggggctctcagGTGGGCGTCGGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTAACTGTCTT
 tcttgat  putative branch site (score: 4)
                                                ctctc  putative PPT
                     tcatataattttctga  TA-rich tract