Sequence
atgc intronic sequence ATGC exonic sequencegtttgtgtttacttaattatattgtgcaactctatggtgaagctttaaattgaatcccttttttgtgtgaaaaatagacaatggcttcgtaccttgtttcatcactgccttttttctatcagACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTGCTGTTTCTTCGGTGGAGTGAGCACCAAAAAAGGCTTTGCAATTATCTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G102475_T03 (Zea mays), 3'ss of exon 7
gtttgtgtttacttaattatattgtgcaactctatggtgaagctttaaattgaatcccttttttgtgtgaaaaatagacaatggcttcgtaccttgtttcatcactgccttttttctatcagACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTGCTGTTTCTTCGGTGGAGTGAGCACCAAAAAAGGCTTTGCAATTATCTAA
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-------------------------gtaagttcacggctt-gttttcatctgttacaactacatatttcaattg-atatatttactttgcaa-tcatacaatctttgatgctctttt-ttagACGCTCCGCGCTCGTGTAGCTGCTAAGGCAGAAGAAAAGAGGTTGGAGCTGTTGTACATTCAGTGGACTGAGCATCATAAAAGGCTGTCCAATTTCTTAA
upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G19640.1 (Glycine max), 3'ss of exon 7
gtttgtgtttact--taattatattgtgcaactctatggtgaagctttaaattgaatcccttttttgtgtgaaaaatagacaatggcttcgtaccttgtttcatcactgccttttttctatcagACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTGCTGTTTCTTCGGTGGAGTGAGCACCAAAAAAGGCTTTGCAATTATCTAA
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gtttgttttcaataataactattctttgctattc-ataataga---tcatgctacattctgattctc--------attaacaat-----tatatttttttta--------cctattcccatcagACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAA
upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G05410.4 (Glycine max), 3'ss of exon 7
gtttgtgtttact--taattatattgtgcaactctatggtgaagctttaaattgaatcccttttttgtgtgaaaaatagacaatggcttcgtaccttgtttcatcactgccttttttctatcagACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTGCTGTTTCTTCGGTGGAGTGAGCACCAAAAAAGGCTTTGCAATTATCTAA
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gtttgttttcaatgataactattctttgctattc-ataatagacaatgacacaacgttccattttgattctca---ttaacaat-----tatattctttttccccccta-----ttcctatcagACTCTTAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGACTGAGCATCATAAAAGACTAAGCAATTTTATAA
upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G15200.3 (Arabidopsis thaliana), 3'ss of exon 7
gtttgtgtttacttaattatattgtgcaactctatggtgaagctttaaattgaatcccttttttgtgtgaaaaatagacaatggcttcgtaccttgtttcatcactgccttttttctatcagACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTGCTGTTTCTTCGGTGGAGTGAGCACCAAAAAAGGCTTTGCAATTATCTAA
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--------gtaagtggccagcttaagtttttttctctttgcataccattccaaatggcagtcttgtgtagtaaagatctgata------tactcaatttaactggt---------caatcagACTCTTCGGGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAATTGGAATTGCTTTTCCTTCAATGGAGTGAGCACCAAAAGAAACTTAGCAATTTTATAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110711839|gb|EE088776.1|EE088776EST: TGAGGCAACAAGAGCGTGAACAAATTGCAGAAAATCGGAGACGAGATCTG ACTCTCAGAGCTCGTGTTGCTGCCA-GGCAGAAGAAAAGAAGTGGGA-TTG
genomic: TGAGGCAACAAGAGCGTGAACAAATTGCAGAAAATCGGAGACGAGATCTGgtttgtgttt ... tttctatcagACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTG
EST:
gi|110712516|gb|EE090229.1|EE090229EST: TGAGGCAACAAGAGCGTGAACCAATTGCAGAAAATCGGAGACGAGATCTG ACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAA
genomic: TGAGGCAACAAGAGCGTGAACAAATTGCAGAAAATCGGAGACGAGATCTGgtttgtgttt ... tttctatcagACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaaaatagacaatggcttcgtaccttgtttcatcactgccttttttctatcagACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTGCTGTTTCTTCGGTGGAGTGAGCACCAAAAAAGGCTTTGCAATTATCTAA
tttcatcactgccttt CT-rich tract
ttttttctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtgtttacttaattatattgtgcaactctatggtgaagctttaaattgaatcccttttttgtgtgaaaaatagacaatggcttcgtaccttgtttcatcactgccttttttctatcagACTCTCAGAGCTCGTGTTGCTGCCAAGGCAGAAGAAAAGAAGTTGGAATTGCTGTTTCTTCGGTGGAGTGAGCACCAAAAAAGGCTTTGCAATTATCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG