1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatcaataatttggccacctagaatgtttcattgtccatgggttgtcttttacttgtcaagaaactatgatgatacgcttgttgaccataatatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTTGAGCAACTTGAAGTCACACAGAATAAGCGGCAGAATGCTTGGCAGCAGT
species | Vitis vinifera |
transcript | Vv12s0035g01830.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTG AAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTTEST: gi|45771787|gb|CN007639.1|CN007639
genomic: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTGgtgggtggag ... atatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTT
EST: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTG AAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTTEST: gi|32271783|gb|CD720942.1|CD720942
genomic: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTGgtgggtggag ... atatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTT
EST: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTG AAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTTEST: gi|30327885|gb|CD011147.1|CD011147
genomic: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTGgtgggtggag ... atatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTT
EST: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTG AAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTTEST: gi|30252727|gb|CB970278.1|CB970278
genomic: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTGgtgggtggag ... atatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTT
EST: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTG AAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTTEST: gi|30323816|gb|CD007078.1|CD007078
genomic: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTGgtgggtggag ... atatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTT
EST: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTG AAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTTEST: gi|30129723|gb|CB915062.1|CB915062
genomic: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTGgtgggtggag ... atatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTT
EST: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTG AAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTT
genomic: GAAGTTTACCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAAGATGTGgtgggtggag ... atatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTT
tcttttacttgtcaagaaactatgatgatacgcttgttgaccataatatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTTGAGCAACTTGAAGTCACACAGAATAAGCGGCAGAATGCTTGGCAGCAGT
tgttgac putative branch site (score: 3)
ataatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcaataatttggccacctagaatgtttcattgtccatgggttgtcttttacttgtcaagaaactatgatgatacgcttgttgaccataatatttgcagAAAATTGCTAAGCGCAAAAAGATACATGCTTTTAAGTCGAAGATGCGGTTTGAGCAACTTGAAGTCACACAGAATAAGCGGCAGAATGCTTGGCAGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - ccaccta
- - - - - - - - - - - - - - - - - tccatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac