Sequence
atgc intronic sequence ATGC exonic sequence...aaaataagtattaattaactattcttttgtgtcttagatcccctcaacagtgtttttagttggtactgggtactaacaatttcttgtgctctgagagcagGCCCCAACCATCTTGGGATCGTACCTGTACAGCAGCAGCAGCCATTGGCCTCCTCTCTGAGCTCCAACTTATTCCAGAGTTTGGCTCATATGGATTGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g03810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G33120.1 (Glycine max), 3'ss of exon 10
--------------------------------------------aaaataagtattaattaactattcttttgtgtcttagatcccctcaacagtgtttttagttggtactgggtactaacaatttcttgtgctctgagagcagGCCCCAACCATCTTGGGATCGTACCTGTACAGCAGCAGCAGCCATTGGCCTCCTCTCTGAGCTCCAACTTATTCCAGAGTTTGGCTCATATGGATTGGAT
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gtgtgtaagaaaaggaaactaagattaactgacacctatgctacaaaatatatat-ggctgttttttcccttgttctctt--ttttatcaactttctgctgtgtttaatgtaatctatggccatctattgtatttcaagggcagGCCACAGCCATCTTGGGATCGTACATGTACAGCAGCAGCAGCTGCTGGCCTGCTCTCAGAGCTCCAACTTCTTCCACAGTTTAGCACCGTTGGATTGGAT
upper sequence: Vv12s0028g03810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G37340.2 (Glycine max), 3'ss of exon 7
--------------aaaataagtattaattaactattcttttgtg--------tcttagatcccctcaacagtgtttttagttggtactgggtac------taacaatttcttgtgctctgagagcagGCCCCAACCATCTTGGGATCGTACCTGTACAGCAGCAGCAGCCATTGGCCTCCTCTCTGAGCTCCAACTTATTCCAGAGTTTGGCTCATATGGATTGGAT
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gtgagtaagaaaatgaaattatgattaactgacacctgtgctgcaaaatatattctttctctctttctttatcgactttccatggcatttaatgtaatctatgcccatctattgtatttcgatggcagGCCACAGCCATCTTGGGATCGTACATGTACAGCGGCAGCAGCTGCTGGTCTGCTCTCAGAGCTCCAGCTTCTTCCACAGTTTAGCTCTGTTGAATTGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacagtgtttttagttggtactgggtactaacaatttcttgtgctctgagagcagGCCCCAACCATCTTGGGATCGTACCTGTACAGCAGCAGCAGCCATTGGCCTCCTCTCTGAGCTCCAACTTATTCCAGAGTTTGGCTCATATGGATTGGAT
tactaac putative branch site (score: 0)
tttttagtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaataagtattaattaactattcttttgtgtcttagatcccctcaacagtgtttttagttggtactgggtactaacaatttcttgtgctctgagagcagGCCCCAACCATCTTGGGATCGTACCTGTACAGCAGCAGCAGCCATTGGCCTCCTCTCTGAGCTCCAACTTATTCCAGAGTTTGGCTCATATGGATTGGAT
aaaataa
- - - - - - - - - - - - - - - - - - - tcccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacaa