Sequence
atgc intronic sequence ATGC exonic sequence...tttctttgaaagatttttggaaatctatttttagctatttaaactttaggatgtttcttgtattgctttcttactgaatcttcaaattgtggtctgccagGTTATGACTGCACTGCCCACTGTTGAGTTGGATCCCCCAACCATTTCCATGACCTTTAGTGTCAATGACTCTCCACTGGCTGGTCGTGATGGCACCCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G14080.1 (Glycine max), 3'ss of exon 7
----tttctttgaaagatttttggaaatctatttttagctatttaaactttaggatgt-ttcttgtattgctttcttactgaatcttcaaattgtggtctgccagGTTATGACTGCACTGCCCACTGTTGAGTTGGATCCCCCAACCATTTCCATGACCTTTAGTGTCAATGACTCTCCACTGGCTGGTCGTGATGGCACCCAT
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aaaagtactcttagataacct----aacctaattgtacaaattcaaagttttaattatgcatttactttgatatgtaactgggg-taaatgtttttatgtcccagGTTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCATTGGCTGGTCGTGATGGCTCTCAT
upper sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G43820.2 (Glycine max), 3'ss of exon 7
tttctttgaaagatttttgg--aaatctatttttagctatttaaacttt-aggatgtttcttgtat-tgctttcttactgaatcttcaaattgtggtctgccagGTTATGACTGCACTGCCCACTGTTGAGTTGGATCCCCCAACCATTTCCATGACCTTTAGTGTCAATGACTCTCCACTGGCTGGTCGTGATGGCACCCAT
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-ttattaaatttatattcaatttaatttaaacttaatgtcttgtattttgagaacatttctagcatgtaattgatgactggggtat---gtttttatgtcccagATTATGTCTGCTTTGCCCACAGTTGAATTGGACCCTCCTACAATTTCCATGACTTTTGGTGTAAACGACTCCCCACTAGCTGGCCGTGATGGCACTCAT
upper sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G31060.3 (Arabidopsis thaliana), 3'ss of exon 7
-------------------------------tttctttgaaagatttttggaaatctatttttagct--atttaaactttaggatgtttcttg--tatt--gctttcttactgaat-cttcaaatt-gtggtctgccagGTTATGACTGCACTGCCCACTGTTGAGTTGGATCCCCCAACCATTTCCATGACCTTTAGTGTCAATGACTCTCCACTGGCTGGTCGTGATGGCACCCAT
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gtaatatccgaatggactacttccctgttttattcttagatatataattg-aattctgcttttaacataacttcttccattgatccctatttgaatattaagacgcttgaataaatgcttcatttttattgtctttcagGTCACAACTGCACTCCCTACTGTTGAGTTAGATCCACCAACAATTTCTATGACGTTTGGTGTCAATGACTCTCCGTTGGCTGGTCAGGATGGCACCCAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaggatgtttcttgtattgctttcttactgaatcttcaaattgtggtctgccagGTTATGACTGCACTGCCCACTGTTGAGTTGGATCCCCCAACCATTTCCATGACCTTTAGTGTCAATGACTCTCCACTGGCTGGTCGTGATGGCACCCAT
ttcttac putative branch site (score: 2)
ttcaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttctttgaaagatttttggaaatctatttttagctatttaaactttaggatgtttcttgtattgctttcttactgaatcttcaaattgtggtctgccagGTTATGACTGCACTGCCCACTGTTGAGTTGGATCCCCCAACCATTTCCATGACCTTTAGTGTCAATGACTCTCCACTGGCTGGTCGTGATGGCACCCAT
- - - tgaaaga
- - - - - - - - - ggaaatc