1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attacttgattcttctctgcatattgtgtgttataggatggctttgtgtatctgcataaaagaacagtgtttgaggttacaatttttgtttaatatgcagGAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAG
species | Vitis vinifera |
transcript | Vv12s0028g01120.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAAAGTTGGGATCAG GAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCTEST: gi|110698188|gb|EE075460.1|EE075460
genomic: AAAAGTTGGGATCAGgtatcaattc ... taatatgcagGAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCT
EST: GCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGATCAG GAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCTEST: gi|110388093|gb|EC952810.1|EC952810
genomic: GCTGGTTTGCTGCAGATGCTGATAACATATCACTTAAAAGTTGGGATCAGgtatcaattc ... taatatgcagGAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCT
EST: AAAAGTTGGGATCAG GAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCT
genomic: AAAAGTTGGGATCAGgtatcaattc ... taatatgcagGAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCT
gtgtatctgcataaaagaacagtgtttgaggttacaatttttgtttaatatgcagGAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAG
gtttaat putative branch site (score: 4)
tttttgttt CT-rich tract
ttacaatttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacttgattcttctctgcatattgtgtgttataggatggctttgtgtatctgcataaaagaacagtgtttgaggttacaatttttgtttaatatgcagGAAGAACTCCTTCCTGGTGGTCATGGGCTAATGGTCCGAGGTTACATCCCTGTTATAAACACCCTCGCAAAAGGTCTCGACATCCACTTGAACCACAG
- - - - - - -tctctgc
- - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - gatggct
- - - - - - - - - - - - - - - - - - - - - - - - -atctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa