Sequence
atgc intronic sequence ATGC exonic sequencegtatactttgaacttgtacctttttaacatatttatatagtttatcaaagcataatcacttcctctgtaagtgcagAATTTACCAGATGGTGTGAAATTAAGAGGTGATATCAATGTGCTGCTTTTGGGGGATCCATCCACTGCTAAATCACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G22420.1 (Glycine max), 3'ss of exon 7
------------------gtatactttgaacttgtacctttttaacatatttatatag-tttatcaaagcataatcacttcctctgtaagtgcagAATTTACCAGATGGTGTGAAATTAAGAGGTGATATCAATGTGCTGCTTTTGGGGGATCCATCCACTGCTAAATCACAG
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gtataccattgtctatgaatgcccctttattttattggagaataacataataacataaatctatca---tatgacccatttctttgcaaa--cagAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAG
upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G11220.1 (Glycine max), 3'ss of exon 7
------------------gtatactttgaacttgtacctttttaacata---ttta-----tatagtttatcaaagcataatcacttcctctgtaagtgcagAATTTACCAGATGGTGTGAAATTAAGAGGTGATATCAATGTGCTGCTTTTGGGGGATCCATCCACTGCTAAATCACAG
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gtataccattatctatgaatatccatttattttattggagaataacataaatcttagggcctaccatttatgatcctatgaccaatttctttgcaaa--cagAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAG
upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G07690.2 (Arabidopsis thaliana), 3'ss of exon 7
--------gtatactttgaacttgtacctttttaacatatt-tatatagttt--atcaaagcataatcacttcctctgtaagtgcagAATTTACCAGATGGTGTGAAATTAAGAGGTGATATCAATGTGCTGCTTTTGGGGGATCCATCCACTGCTAAATCACAG
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gtaggaaactgtgatagcagtttttattttctgtgcactttgtatacgtttttgatatatttatatacatttctatctttgattcagAGCCTGCCCGATGGAGTGAAACTAAGAGGTGATATTAATGTTTTGCTTTTGGGAGACCCATCAACTGCAAAATCACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttaacatatttatatagtttatcaaagcataatcacttcctctgtaagtgcagAATTTACCAGATGGTGTGAAATTAAGAGGTGATATCAATGTGCTGCTTTTGGGGGATCCATCCACTGCTAAATCACAG
ttttaac putative branch site (score: 2)
cttcctctgt putative PPT
atatttatatagttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatactttgaacttgtacctttttaacatatttatatagtttatcaaagcataatcacttcctctgtaagtgcagAATTTACCAGATGGTGTGAAATTAAGAGGTGATATCAATGTGCTGCTTTTGGGGGATCCATCCACTGCTAAATCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT