1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attacttacacacaatataataactaagtatttatacctgttagagccccatgtaaccttctctattggctgctagaaactgactattgtctttttgcagTATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACAGAAAACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCG
species | Vitis vinifera |
transcript | Vv11s0103g00120.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG TATCCTCCT-GTTATAAAGACATGAGTTTTTGGATTAEST: gi|351045846|gb|FQ441031.1|FQ441031
genomic: TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAGgtattactca ... ctttttgcagTATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTA
EST: TTCTCAAAGGGCCAGCTAGGGGTCAAGTTTCA-GCCATTTTCAAAG TATCCTCCTTGT-ATAAGGEST: gi|46919639|gb|CN548968.1|CN548968
genomic: TTCTCAAAGGGCCAGCTAGGGGTCAAGTT-CAAGCCATTTTCAAAGgtattactca ... ctttttgcagTATCCTCCTTGTTATAAGG
EST: TCAATTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG TATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACAEST: gi|351052538|gb|FQ456386.1|FQ456386
genomic: TCAATTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAGgtattactca ... ctttttgcagTATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACA
EST: TTCTCAAAAGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG TATCCTCCTTGTTATAAGGACATGAEST: gi|349807616|gb|FQ402007.1|FQ402007
genomic: TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAGgtattactca ... ctttttgcagTATCCTCCTTGTTATAAGGACATGA
EST: TTCTCAAAGGGCCAGCTAGGGGGTCAAGTTCAAGCAATTTTCAAAG TATCCCTCCTTGTTATAAAGACATEST: gi|352764071|gb|FQ467641.1|FQ467641
genomic: TTCTCAAAGGGCCAGCTAGGGG-TCAAGTTCAAGCCATTTTCAAAGgtattactca ... ctttttgcagTATCC-TCCTTGTTATAAGGACAT
EST: TTCTCAAAGGGCCAGCTGGGGGTCAAGTTCAAGCCATTTTCAAAG TATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTATTGAGTCATTCACAEST: gi|33406146|gb|CF211773.1|CF211773
genomic: TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAGgtattactca ... ctttttgcagTATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACA
EST: TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAG TATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACA
genomic: TTCTCAAAGGGCCAGCTAGGGGTCAAGTTCAAGCCATTTTCAAAGgtattactca ... ctttttgcagTATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACA
gccccatgtaaccttctctattggctgctagaaactgactattgtctttttgcagTATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACAGAAAACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCG
aactgac putative branch site (score: 2)
ttgtcttttt putative PPT
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacttacacacaatataataactaagtatttatacctgttagagccccatgtaaccttctctattggctgctagaaactgactattgtctttttgcagTATCCTCCTTGTTATAAGGACATGAGTTTTTGGATTAATGAGTCATTCACAGAAAACAATTTATGTGAGGTTGTTAGAGGAGTTGCTGGAGATCTTGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - -acacaca
- - - - - - - - - - - - - - - - - tacctgt
- - - - - - - - - - - - - - - - - - - - - - - -cccatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactga