1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatggttatttcatcgatgtttgtgtatgtatgagaattttcttgttgaattcactaatgctctatttcatctctttcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAATATCATCGAGTTGACATTGAAGTAATATTTCTTTCTAACTAGATCTAT
species | Vitis vinifera |
transcript | Vv11s0052g01560.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGCATTATTTTTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAA GCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAEST: gi|34546960|gb|CF515192.1|CF515192
genomic: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAAgtatggttat ... tcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCA
EST: AGGCATTATTTTTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAA GCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAEST: gi|45770823|gb|CN006675.1|CN006675
genomic: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAAgtatggttat ... tcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCA
EST: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAA GCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAEST: gi|352777774|gb|FQ466827.1|FQ466827
genomic: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAAgtatggttat ... tcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCA
EST: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAA GCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAEST: gi|110413757|gb|EC979564.1|EC979564
genomic: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAAgtatggttat ... tcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCA
EST: AGGCATTATTTTTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAA GCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAEST: gi|34547049|gb|CF515281.1|CF515281
genomic: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAAgtatggttat ... tcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCA
EST: AGCCATTATTTTTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAA GCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAEST: gi|34542705|gb|CF510937.1|CF510937
genomic: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAAgtatggttat ... tcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCA
EST: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAA GCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAEST: gi|352773655|gb|FQ472437.1|FQ472437
genomic: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAAgtatggttat ... tcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCA
EST: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAA GCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCA
genomic: AGGCATTATTTCTTGCAATCATAATTCTTTGCACCGATTGGGAGAAAGAAgtatggttat ... tcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCA
tgagaattttcttgttgaattcactaatgctctatttcatctctttcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAATATCATCGAGTTGACATTGAAGTAATATTTCTTTCTAACTAGATCTAT
cactaat putative branch site (score: 2)
tgctctatttcatctc CT-rich tract
attttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggttatttcatcgatgtttgtgtatgtatgagaattttcttgttgaattcactaatgctctatttcatctctttcttttgtagGCAAAGAAGGCTACTGATAGAGTGTATGACTCAATGGTCCCTGTGAATGCAATATCATCGAGTTGACATTGAAGTAATATTTCTTTCTAACTAGATCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG