1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaaacctaataaagtagttggcaatcacggtaacctgggtgttagtacacaatctctaattcatttgtttgtttctgtttctttcctcttcttttatagGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAACCCGAATGGAAATATTTGATGGAGAGTTGCTGGGCTTCCGATCCAGCAGA
species | Vitis vinifera |
transcript | Vv11s0052g01480.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTG GAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAACEST: gi|71883412|gb|DT032467.1|DT032467
genomic: GCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTGgtaggagcta ... tcttttatagGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAAC
EST: GCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTG GAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAACEST: gi|30296150|gb|CB972944.1|CB972944
genomic: GCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTGgtaggagcta ... tcttttatagGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAAC
EST: GCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTG GAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAACEST: gi|71882459|gb|DT031514.1|DT031514
genomic: GCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTGgtaggagcta ... tcttttatagGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAAC
EST: GCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTG GAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAAC
genomic: GCTTACTGGGGACGAACCTTATGCAGATATGCATTGTGCTTCTATAATTGgtaggagcta ... tcttttatagGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAAC
gtacacaatctctaattcatttgtttgtttctgtttctttcctcttcttttatagGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAACCCGAATGGAAATATTTGATGGAGAGTTGCTGGGCTTCCGATCCAGCAGA
ctctaat putative branch site (score: 3)
ttcatttgtttgtttc CT-rich tract
taattcatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaacctaataaagtagttggcaatcacggtaacctgggtgttagtacacaatctctaattcatttgtttgtttctgtttctttcctcttcttttatagGAGGAATCGTGAACAACACATTGCGTCCACAAATTCCAAGATGGTGCGAACCCGAATGGAAATATTTGATGGAGAGTTGCTGGGCTTCCGATCCAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
caaaacc
- - - - aataaag
- - - - - - - - - - -gcaatca
- - - - - - - - - - - - - - - - - - -gggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - cacaatc