Sequence
atgc intronic sequence ATGC exonic sequencegtaggatcctttccatgtgtattattatgatattatcttttaggggaaacttaaaggttgctcatgttagcaaatgggaacatctttcatgaatgacaacatatatggagaacaggagaagttcatgagtaggaaattggggaatgattgtgtttcacttgcagGAGAGGCTTAACCAAGTTTTGATGGAGAAAAAGAAGGAATCGAGGTCTGGCATGGAGATAATGAATCTTCTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G00980.1 (Glycine max), 3'ss of exon 7
gtaggatcctttccatgtgtattattatgatattatcttttaggggaaacttaaa-ggttgctcatgttagcaaatgggaacatctttcatgaatgacaacatatatggagaacaggagaagttcatgagtaggaaattggggaatgattgtgtttcacttgcagGAGAGGCTTAACCAAGTTTTGATGGAGAAAAAGAAGGAATCGAGGTCTGGCATGGAGATAATGAATCTTCTTCAG
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gtgtgacatctttgat-----tttttattttttttattctgatgagaaccatatttggtgattagtgctcttacatgataggaacttacacaagt--ccacctattattagatttggaaa------tgaataagggct--ggtattttttgtattt-----gcagGAGAGGCTAAACCAAGTGTTGATGGAGAAGAAGAAAGAGTCTAGGTCAGGCATGGAGATAATGAATTTGCTTCAG
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G07040.2 (Glycine max), 3'ss of exon 7
gtaggatcctttccatgtgtattattatgatattatcttttaggggaaacttaaa-ggttgctcatgttagcaaatgggaacatctttcatgaatgacaacatatatggagaacaggagaagttcatgagtaggaaattggggaatgattgtgtttcacttgcagGAGAGGCTTAACCAAGTTTTGATGGAGAAAAAGAAGGAATCGAGGTCTGGCATGGAGATAATGAATCTTCTTCAG
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---------gtgtgatatctttgattttgtttttat-tctgatgagaaccatatttggtgattagtgcttttacatgataggaacttacgcgggt--ccacatattattagatttggaaatgatgaagggctgg---------------tattttgtatttgcagGAGAGGCTAAACCAAGTGTTGATGGAGAAGAAGAAAGAGTCTAGGTCAGGCATGGAGATAATGAATTTGCTTCAG
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G18876.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaggatcctttccatgtgtattattatgatattatcttttaggggaaacttaaaggttgctcatgttagcaaatgggaacatctttcatgaatgacaacatatatggagaacaggagaagttcatgagtaggaaattggggaatgattgtgtttcacttgcagGAGAGGCTTAACCAAGTTTTGATGGAGAAAAAGAAGGAATCGAGGTCTGGCATGGAGATAATGAATCTTCTTCAG
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-----------------------------------------------------------------------gtatgggttcacatagcaagtt---cagagtgtttgtaatatagg-----ttcaatcttaattaattaaaaattgatcttgtttta------gGAGAGGTTAAACCAAGTGTTGATGGAGAAAAAGAAGGAAACGAGATCAGGCATGGAGATTATGAATCTACTCCAG
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G57410.2 (Arabidopsis thaliana), 3'ss of exon 7
gtaggatcctttccatgtgtattattatgatattatcttttaggggaaacttaaaggttgctcatgttagcaaatgggaacatctttcatgaatgacaacatatatggagaacaggagaagttcatgagtaggaaattggggaatgattgtgtttcacttgcagGAGAGGCTTAACCAAGTTTTGATGGAGAAAAAGAAGGAATCGAGGTCTGGCATGGAGATAATGAATCTTCTTCAG
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------------------------------------------------------------------------gttttgtatctttttctcgtgaaactagcttttctgcatcctgtttaattctgcattttg----------aacgctt-tgtttctcttgtagGAACGGCTGAATCAAGTGTTAATGGAGAAAAAGAAAGAATCAAGATCTGGAATGGAGATTATGAATTTGCTACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaacaggagaagttcatgagtaggaaattggggaatgattgtgtttcacttgcagGAGAGGCTTAACCAAGTTTTGATGGAGAAAAAGAAGGAATCGAGGTCTGGCATGGAGATAATGAATCTTCTTCAG
tttcactt CT-rich tract
aatgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggatcctttccatgtgtattattatgatattatcttttaggggaaacttaaaggttgctcatgttagcaaatgggaacatctttcatgaatgacaacatatatggagaacaggagaagttcatgagtaggaaattggggaatgattgtgtttcacttgcagGAGAGGCTTAACCAAGTTTTGATGGAGAAAAAGAAGGAATCGAGGTCTGGCATGGAGATAATGAATCTTCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT