1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctttggtggtaattgttgatctcttgctttgaaaaaggaagaaattgtagtttgtaaagcagaatgtgctgagatattgggttttgtgctctttgacagACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGGCGCGACTCAGAGCAGTGGATGCATCATCGCTTACTCCCACAAGAACTCA
species | Vitis vinifera |
transcript | Vv11s0037g00230.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCCATTCTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAG ACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGGEST: gi|110388758|gb|EC953541.1|EC953541
genomic: TTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgtaaatgaag ... tctttgacagACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGG
EST: TTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAG ACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGG
genomic: TTGCCATACTTGGTCTCATACTCTTTGCACTTCTGATTGGCAACATGCAGgtaaatgaag ... tctttgacagACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGG
ttgtagtttgtaaagcagaatgtgctgagatattgggttttgtgctctttgacagACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGGCGCGACTCAGAGCAGTGGATGCATCATCGCTTACTCCCACAAGAACTCA
tgctcttt CT-rich tract
tttgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttggtggtaattgttgatctcttgctttgaaaaaggaagaaattgtagtttgtaaagcagaatgtgctgagatattgggttttgtgctctttgacagACCTATCTTCAGTCTCTTACCATACGGCTTGAAGAGATGAGGGTCAAAAGGCGCGACTCAGAGCAGTGGATGCATCATCGCTTACTCCCACAAGAACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - tggtggt
- - - - - - - - - - -ctcttgc
- - - - - - - - - - - - - - - tgaaaaa
- - - - - - - - - - - - - - - - - - -ggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -taaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc