Sequence
atgc intronic sequence ATGC exonic sequencegtaggctcacattcaatattccttcaacgttttggatgcagaaaatttcaggcgtctctagctgacttatatttcctaacctatcctcccagGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G23920.1 (Glycine max), 3'ss of exon 7
gtaggctcacattcaatattccttcaacgttttggatgcagaaaatttcaggcgtctc-tagctgacttatatttcctaacctatcctcccagGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAG
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--------gtaatccttgct--ttaaatttaatcaaattacattattctagcttttccatagagaactcatgtg----aatct--tgtatcagGCATGCAAGATAGTTGGGGGCCAGAGATATACAAAAGGGCTAAATGAAAAGCAGATAACTTCTCTGCTGAAGGTCTCATGTCAAAGGCCCCGCGAACAAG
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G08170.1 (Glycine max), 3'ss of exon 7
gtaggctc---acattcaatattccttcaacgttttggatgcagaaaatttcaggcgtctctagctgacttatatttcctaacctatcctcccagGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAG
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gtaagctcttctcattcaat--ttattcaacccattttttactaagtacttta----tttttcaatgaacacttctagtgaatct--tgtcctagGCATGTAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAG
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G12850.1 (Glycine max), 3'ss of exon 7
gtaggctcacattcaatattccttcaacgttttggatgcagaaaatttcaggcgtctctagctgacttatatttcctaacctatcctcccagGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAG
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gtaagttcttctttca-atttattgaacccatttcattcttagtactttat---ttttcaatgaacatttcatgtgaaacttgtcc---cagGCATGCAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAG
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G21450.1 (Glycine max), 3'ss of exon 8
gtaggctcacattcaatattccttcaacgttttggatgcagaaaatttcaggcgtctctagctgacttatatttcctaacctatcctcccagGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAG
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gtaatctttcctttaa-atttaatcaaattacttgattctagcttttcca------tcgag--aactcatgtg----aatct--tgtcccagGCATGCAAGATAGTCGGAGGCCAGAGATATACAAAAGGGCTAAATGAAAAGCAGATAACTTCTCTGCTGAAGATCTCATGTCAAAGGCCCCGCGAACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcagaaaatttcaggcgtctctagctgacttatatttcctaacctatcctcccagGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAG
tcctaac putative branch site (score: 1)
cctatcctccc CT-rich tract
acttatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggctcacattcaatattccttcaacgttttggatgcagaaaatttcaggcgtctctagctgacttatatttcctaacctatcctcccagGCTTGTAAGATTATTGGGGGACAGAGATATACCAAAGGGCTGACTGACAAGCAGATAACTTCCTTGTTAAAAGTAACATGCCAAAGACCCAGGGATCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT