1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagttctttctttaaaaaactgtttttcagaactactttcaaaaacactttcttcctcgattcttcgggtttcgatagcaagtctcattccaactccatgtgaaacgttattatattgcagGTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACAGTCAAGCTTGGAAACATACCAAACTCCACGCTCTACCGTGACGTAGAGC
species | Vitis vinifera |
transcript | Vv11s0016g04160.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGTTTTTTGGAGTTACCTTCGTTACAATGGATGTAGGCCTCATGCTCTCG GTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACAEST: gi|110403543|gb|EC969137.1|EC969137
genomic: CGTTTTTGGGAGTTACCTTCGTTACAATGGATGTAGGCCTCATGCTCTCGgtgagttctt ... tatattgcagGTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACA
EST: CATTTTTTGGAGTTACCTTCGTTACAATGGATGTAGGCCTCATGCTCTCG GTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACAEST: gi|219555052|gb|FG984841.1|FG984841
genomic: CGTTTTTGGGAGTTACCTTCGTTACAATGGATGTAGGCCTCATGCTCTCGgtgagttctt ... tatattgcagGTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACA
EST: CGTTTTTTGGAGTTACCTTCGTTACAATGGATGTAGGCCTCATGCTCTCG GTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACA
genomic: CGTTTTTGGGAGTTACCTTCGTTACAATGGATGTAGGCCTCATGCTCTCGgtgagttctt ... tatattgcagGTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACA
gggtttcgatagcaagtctcattccaactccatgtgaaacgttattatattgcagGTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACAGTCAAGCTTGGAAACATACCAAACTCCACGCTCTACCGTGACGTAGAGC
aaacgttattatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctttctttaaaaaactgtttttcagaactactttcaaaaacactttcttcctcgattcttcgggtttcgatagcaagtctcattccaactccatgtgaaacgttattatattgcagGTAGGGCTTTCAATTGTGAGAGCACTTCTATATGTGGCCAGGCCTGCCACAGTCAAGCTTGGAAACATACCAAACTCCACGCTCTACCGTGACGTAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT