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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagaagaattagatcctgcaatttttatagttgatattttagctttgaactatacttcctaacttatgggagctcagGTGGCGCATTTGTTTTTGGATAGCTACAGTTCCAGCTGGAATACTTGCTTTTGCCATGATGTTCTGTGCAGAGAGTCCACACTGGCTATACAAG

Basic information

species Vitis vinifera
transcript Vv11s0016g03660.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712692|gb|FC062264.1|FC062264
EST:     CTCATGGGGGCTCTGTTTATTGGAATCCCTGTCAAGGCAATTATTGGATG                         GTGGCGCATTTGTTTTTGGATAGCTACAGTTCCAGCTGGAATACTTGCTTT
genomic: CTCATGGGGGCTCTGTTTATTGGAATCCCTGTCAAGGCAATTATTGGATGgtaagaagaa ... gggagctcagGTGGCGCATTTGTTTTTGGATAGCTACAGTTCCAGCTGGAATACTTGCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatagttgatattttagctttgaactatacttcctaacttatgggagctcagGTGGCGCATTTGTTTTTGGATAGCTACAGTTCCAGCTGGAATACTTGCTTTTGCCATGATGTTCTGTGCAGAGAGTCCACACTGGCTATACAAG
                                  tcctaac  putative branch site (score: 1)
     tagttgatatttta  TA-rich tract