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...ctggcatcaattctcttttctactcattctcattttgtattttaagttattactggttttatgactttgacatttgaatactttaaccaatgacaagcagATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCAACAGTATCTACAATAATACCGGCTTATTTGGAATTCAAGCTACCACT
species | Vitis vinifera |
transcript | Vv11s0016g02870.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTAT ATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCAEST: gi|22013547|gb|BQ798581.1|BQ798581
genomic: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTATgtaagtttct ... tgacaagcagATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCA
EST: AAAGGGATGTACTCACGACTAT ATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCAEST: gi|110716318|gb|EE091196.1|EE091196
genomic: AAAGGGATGTACTCACGACTATgtaagtttct ... tgacaagcagATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCA
EST: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTAT ATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCAEST: gi|110382252|gb|EC938898.1|EC938898
genomic: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTATgtaagtttct ... tgacaagcagATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCA
EST: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTAT ATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCAEST: gi|22014250|gb|BQ799284.1|BQ799284
genomic: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTATgtaagtttct ... tgacaagcagATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCA
EST: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTAT ATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCAEST: gi|32268962|gb|CD718121.1|CD718121
genomic: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTATgtaagtttct ... tgacaagcagATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCA
EST: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTAT ATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCA
genomic: TGGATCTTTCTCTGCTGGTGGTCCTGGAAAAGGGATGTACTCACGACTATgtaagtttct ... tgacaagcagATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCA
gttattactggttttatgactttgacatttgaatactttaaccaatgacaagcagATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCAACAGTATCTACAATAATACCGGCTTATTTGGAATTCAAGCTACCACT
ctttaac putative branch site (score: 3)
atttgaatactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggcatcaattctcttttctactcattctcattttgtattttaagttattactggttttatgactttgacatttgaatactttaaccaatgacaagcagATCTTCGTGTCTTGAACACATATCCACAAATTCAGTCATTCTCTGCATTCAACAGTATCTACAATAATACCGGCTTATTTGGAATTCAAGCTACCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- -gcatcaa
- - - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - - - -ttactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa