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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaaatggctttacttgattttgttttgttccttttcatttttcctcattcatgttatgattctgtcattttatcttgtttccagGAAGCCCAAAGTGCAATTAATGACTTAAATG

Basic information

species Vitis vinifera
transcript Vv11s0016g00700.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685954|gb|EE063126.1|EE063126
EST:     AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG                         GAAGCCCAAAGTGCAATTAATGACTTAAATG
genomic: AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGgtaatgaaat ... ttgtttccagGAAGCCCAAAGTGCAATTAATGACTTAAATG
EST: gi|110728255|gb|EE103663.1|EE103663
EST:     AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG                         GAAGCCCAAAGTGCAATTAATGACTTAAATG
genomic: AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGgtaatgaaat ... ttgtttccagGAAGCCCAAAGTGCAATTAATGACTTAAATG
EST: gi|156737274|gb|EV241395.1|EV241395
EST:     AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG                         GAAGCCCAAAGTGCAATTAATGACTTAAATG
genomic: AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGgtaatgaaat ... ttgtttccagGAAGCCCAAAGTGCAATTAATGACTTAAATG
EST: gi|161705551|gb|FC057541.1|FC057541
EST:     AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG                         GAAGCCCAAAGTGCAATTAATGACTTAAATG
genomic: AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGgtaatgaaat ... ttgtttccagGAAGCCCAAAGTGCAATTAATGACTTAAATG
EST: gi|110685748|gb|EE062738.1|EE062738
EST:     AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAG                         GAAGCCCAAAGTGCAATTAATGACTTAAATG
genomic: AAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGgtaatgaaat ... ttgtttccagGAAGCCCAAAGTGCAATTAATGACTTAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttcatttttcctcattcatgttatgattctgtcattttatcttgtttccagGAAGCCCAAAGTGCAATTAATGACTTAAATG
                                      ttttatcttgtttcc  CT-rich tract
                                     attttatcttgttt  TA-rich tract