1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atacctaccatcacatgcacatgttacagccatgctgcataaagacttggtctagcattcttattcataagaaatttccttgcacgttttgtgattgtagTTCGGTGTAGCTGTTGTTATCACAAATCAAGTTGTTGCTCAAGTGGATGGTTCTGCCATCTTTGCTGGACCTCAAATCAAACCTATTGGTGGTAACATTA
species | Vitis vinifera |
transcript | Vv11s0016g00340.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAATGCATCTTGCTAAGTTCCTAAGGAGCCTTCAGAAATTAGCAGATGAG TTCGGTGTAGCTGTTGTTATCACAAATCAAGTTGTTGCTCAAGTGGATGGTEST: gi|161713356|gb|FC062773.1|FC062773
genomic: AAATGCATCTTGCTAAGTTCCTAAGGAGCCTTCAGAAATTAGCAGATGAGgtagactatt ... gtgattgtagTTCGGTGTAGCTGTTGTTATCACAAATCAAGTTGTTGCTCAAGTGGATGGT
EST: AAATGCATCTTGCTAAGTTCCTAAGGAGCCTTCAGAAATTAGCAGATGAG TTCGGTGTAGCTGTTGTTATCACAAATCAAGTTGTTTGCTCA-GTGGATGG
genomic: AAATGCATCTTGCTAAGTTCCTAAGGAGCCTTCAGAAATTAGCAGATGAGgtagactatt ... gtgattgtagTTCGGTGTAGCTGTTGTTATCACAAATCAAGTTGTT-GCTCAAGTGGATGG
cttggtctagcattcttattcataagaaatttccttgcacgttttgtgattgtagTTCGGTGTAGCTGTTGTTATCACAAATCAAGTTGTTGCTCAAGTGGATGGTTCTGCCATCTTTGCTGGACCTCAAATCAAACCTATTGGTGGTAACATTA
attcttattcataaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacctaccatcacatgcacatgttacagccatgctgcataaagacttggtctagcattcttattcataagaaatttccttgcacgttttgtgattgtagTTCGGTGTAGCTGTTGTTATCACAAATCAAGTTGTTGCTCAAGTGGATGGTTCTGCCATCTTTGCTGGACCTCAAATCAAACCTATTGGTGGTAACATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -cctacca
- - - - - -cacatgc
- - - - - - - - - acatgtt
- - - - - - - - - - - - - - -ccatgct
- - - - - - - - - - - - - - - - - - - ataaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcac