Sequence
atgc intronic sequence ATGC exonic sequencegtaaaggaatatatatttccatgtttcactatttaattaaataacaatttaaccagcatttgtggcattaatttgctgtagATGGCACGCTCAAAGAGGGCTTGCATTGTCTTTTTTGATGAAGTTGATGCCATAGGTGGTGCACGTTTTGATGATGGTAAGGGTGGAGACAGAGAAGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g00230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 3'ss of exon 7
-----------------------gtaaaggaatatatatttccatgtttcactatttaattaaa-taacaatttaaccagcatttgtggcattaatttgctgtagATGGCACGCTCAAAGAGGGCTTGCATTGTCTTTTTTGATGAAGTTGATGCCATAGGTGGTGCACGTTTTGATGATGGTAAGGGTGGAGACAGAGAAGTTC
|| | ||| || ||| ||||| | ||| || | | | | |||| | || ||| || | ||||||| || ||||||| ||| |||||||| ||||||||||| || ||||| || || ||||| || ||||| ||||| ||| || || | || ||||
gtgctaatttattgtttatttgtttagatgaacattagttttcatgtgacgtattttgatgattctcatggtgcaacctgtccatg-----ttacttgtgagcagATGGCTCGTTCAAAGAAGGCCTGCATTGTATTTTTTGATGAGGTAGATGCTATTGGAGGTGCTCGGTTTGACGATGGATTGGGGGGTGATAATGAGGTTC
upper sequence: Vv11s0016g00230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 3'ss of exon 7
-------------------------gtaaaggaatatatatttccatgtttcactatttaattaaataacaatttaaccagcatttgtggcattaatttgctgtagATGGCACGCTCAAAGAGGGCTTGCATTGTCTTTTTTGATGAAGTTGATGCCATAGGTGGTGCACGTTTTGATGATGGTAAGGGTGGAGACAGAGAAGTTC
| ||| | | | |||| | || ||| | | || | | | ||| ||| | | | || ||||||| || ||||||| || |||||||| ||||||||||| || |||||||| || ||||| ||||| || ||||| ||| || || | || ||||
ccgccagtgtattgtttactcaaacgctaagtactgtgtattcacgtggcctact-tcgatgcttatcgtggtgcgatttg--tttatggaacttgtgagc---agATGGCCCGTTCAAAGAAAGCGTGCATTGTGTTTTTTGATGAGGTAGATGCCATTGGAGGTGCTCGTTTCGACGATGGGTTGGGAGGTGATAACGAGGTTC
upper sequence: Vv11s0016g00230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ29161 (Selaginella moellendorffii), 3'ss of exon 7
gtaaaggaatatatatttccatgtttcactatttaattaaa--taacaatttaaccagcatttgtggcattaatttgctgtagATGGCACGCTCAAAGAGGGCTTGCATTGTCTTTTTTGATGAAGTTGATGCCATAGGTGGTGCACGTTTTGATGATGGTAAGGGTGGAGACAGAGAAGTTC
| || | ||| ||||| | | | ||| | ||| | | | || || | ||||||| || ||||||| ||||||||||| || ||||| ||||| |||||||| |||||||| | || || || || | ||||| |||| ||||| |
------gtatgttacattctgtgtttattcctggcagtggtcttaaaagttttttttttccctttctcttt---ttctttcagATGGCCCGATCAAAGAAAGCTTGCATTGTTTTCTTTGACGAAGTCGATGCCATTGGTGGTGCCAGATTCGACGACGGCATTGGTGGCGACAACGAAGTGC
upper sequence: Vv11s0016g00230.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ13722 (Selaginella moellendorffii), 3'ss of exon 7
gtaaaggaatatatatttccatgtttcactatttaattaaataacaatttaaccagcatttgtggcattaatttgctgt---agATGGCACGCTCAAAGAGGGCTTGCATTGTCTTTTTTGATGAAGTTGATGCCATAGGTGGTGCACGTTTTGATGATGGTAAGGGTGGAGACAGAGAAGTTC
| || | |||| ||||| | | | || || | ||| | | || || | | ||||||| || ||||||| ||||||||||| || ||||| ||||| |||||||| |||||||| | || || || || | ||||| |||| ||||| |
------gtatgttacattccgtgtttattcctggcagtggtcttaaaattttttatttttttttcctttctctttttctttcagATGGCCCGATCAAAGAAAGCTTGCATTGTTTTCTTTGACGAAGTCGATGCCATTGGTGGTGCCAGATTCGACGACGGCATTGGTGGCGACAACGAAGTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cactatttaattaaataacaatttaaccagcatttgtggcattaatttgctgtagATGGCACGCTCAAAGAGGGCTTGCATTGTCTTTTTTGATGAAGTTGATGCCATAGGTGGTGCACGTTTTGATGATGGTAAGGGTGGAGACAGAGAAGTTC
tttaattaaataacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaggaatatatatttccatgtttcactatttaattaaataacaatttaaccagcatttgtggcattaatttgctgtagATGGCACGCTCAAAGAGGGCTTGCATTGTCTTTTTTGATGAAGTTGATGCCATAGGTGGTGCACGTTTTGATGATGGTAAGGGTGGAGACAGAGAAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT