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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG

Basic information

species Vitis vinifera
transcript Vv10s0116g01210.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os01g47410.1 (Oryza sativa), 3'ss of exon 7
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                ||  ||    |  |||  |  |  |  |     |  ||     |||     ||  | |||   ||       | ||||| |  | |     ||||| |    || ||| |       | |||   |     |  ||  | ||| | |||||| |  || ||||||||||| |||||||||||||||||  || |  | ||||| |||
----------gtgctcaattatcaattttttttcatgctcactat----acctttatttaaatgcaaaatggtctaatctt-----tttctttttgaaagga-----acatagtctaaatcatttt-------ggttgttccctatgtgtca--ttagGATTCTGTGCAGCTGGGTGTGCAGCAATAGCAGATTCTGGAACTTCACTGCTTACTGGTCCCACG

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G153977_T01 (Zea mays), 3'ss of exon 1
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtata-agcacataattagtatgattattatgtcagtttgacacaagcataccacc-tcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                                      || | || ||      | | ||| | ||  |||| |     | ||    ||||  | |||  |    ||   ||    ||||    |||||||  ||||| || |||||||||||||| ||||||||||||||||| ||| | || || || || 
--------------------------------------------------------------------gcaggccaggttcctct-cttctttgttattctatataatgtctcatgttaatgagaaatataactaaatgcgtca--tctaccgttgtcagGGTTTTGTGCTGGTGGTTGTGCAGCAATAGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G035636_T01 (Zea mays), 3'ss of exon 7
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacc-tcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                                        |    || |  | | ||||| |||    | ||| | |||    |  |  | ||| |  | | | || ||      || ||   |||||||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || || 
---------------------------------------------------------------------gtactgcaatgtttatatcttttgtta----tctaatctcatgtcaatgagaaatataac-taaatgtggcatc----tatcattatcagGGTTTTGTGCCGGCGGCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G001713_T01 (Zea mays), 3'ss of exon 3
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacc-tcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                                        |    || |  | | ||||| |||    | ||| | |||    |  |  | ||| |  | | | || ||      || ||   |||||||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || |  
---------------------------------------------------------------------gtactgtaatgtttatatcttttgtta----tctaatctcatgtcaatgagaaatataac-taaatgtggcatc----tatcattatcagGGTTTTGTGCCGGCGGCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCATA

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G370357_T01 (Zea mays), 3'ss of exon 5
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacc-tcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                                        |    || |  | | ||||| |||    | ||| | |||    |  |  | ||| |  | | | || ||      || ||   |||||||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || || 
---------------------------------------------------------------------gtactgcaatgtttatatcttttgtta----tctaatctcatgtcaatgagaaatataac-taaatgtggcatc----tatcattatcagGGTTTTGTGCCGGCGGCTGTGCAGCTATGGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G065757_T02 (Zea mays), 3'ss of exon 7
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacc-tcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                                        |    || |    | ||||| ||| |    ||| | |||  | |  |  | ||| |  | | | || ||      || ||   |||||||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || || 
---------------------------------------------------------------------gtactgcaatgtttctatcttttgttattc---taatctcatgttaatgagaaatataac-taaatgtggcatc----tatcattatcagGGTTTTGTGCCGGTGGCTGTGCAGCCATCGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM5G899123_T01 (Zea mays), 3'ss of exon 2
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacc-tcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                             |   |||||||      | |  | |  |    || |  | | ||||| |||    | ||| | |||    |  |  | ||| |  | | | || ||      || ||   |||||||  |||||||| || |||||||| || ||||||||||||||||| ||| | || || || || 
--------------------------------------------attacaaattgg------gtattacatactgcaatgtttatatcttttgtta----tctaatctcatgtcaatgagaaatataac-taaatgtggcatc----tatcattatcagGGTTTTGTGCCGGCGGCTGTGCAGCCATGGCAGATTCTGGAACTTCCTTGCTTGCTGGCCCCACA

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G11670.1 (Glycine max), 3'ss of exon 6
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaa-agtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
              | |    | |    |   || |||  ||| |       ||| |        | |  | |   | ||| | ||  |||   | ||||||  | |    || ||  |  | |  | |  | |||        ||  |   | | |||| || ||| |    |  ||| ||||||||||||| ||||||||||||||||| || |||||||||
--------------gtatgtgtagaagacaaaattaacagaaatacctatttatttgtttcttctatggcatgatcatattgatagcacttccataaatggttcagggttttatttcat-cggtactgactttagt--------agtttgtgatc-cagGATATTGTACTAATGACTGTTCAGCAATTGCAGACTCTGGAACTTCTTTGTTAGCTGGTCCAACG

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G01500.1 (Glycine max), 3'ss of exon 7
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacata---attagtatgattattatgtcagtttgacacaagcataccacct--cagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                          | ||||  |||  |     ||||    |    | | | |    |   |   | | ||| ||      | |    | ||  |  | |||   |  |  ||||   | |       ||  |||| || |||||    || ||| |||| |||||||| || || ||||||||||||||||||||||||
----------------------------------------gtatgtagagaatgtgttagcagaaattgataatttgttcttcctatgatgcatcattggcatttttgtaaatgggtcagagttttaatttatttggactgacctgatctatttgtctatcagGATATTGTGCTAATGGCTGTTCAGCCATTGCAGACTCAGGGACTTCTTTGTTGGCAGGTCCAACG

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G00810.1 (Glycine max), 3'ss of exon 6
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagt-ttgacacaagcataccacc--tcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                 ||     | |||    ||||| |  |||| |   |   |  |    |  |  |   | ||   |     |    | ||  || |     |||||   || ||  ||||   || |||    |    ||| |||||||| |  |  ||  |||||||||| || |||||||||||||| ||||| |||||||||
--------------------------------gtatgtttagaag--acaaattagcagaaatacctatttgtttctgctatggcatgatattgatagcacttccataaatggttcggggttttatttcatcggtactgactttagtatattgtcatctagGATACTGTGCTGATGACTGCTCAGCAATTGCGGACTCTGGAACTTCTTTATTGGCTGGTCCAACG

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G39240.2 (Glycine max), 3'ss of exon 7
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattgg--aggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataa-ttagtatgattattatgtcagtttgacacaagca-taccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                          | ||||  |||  |  || | | | |  ||    |   |     ||    |  ||     | |  | | ||   | || ||  |||||   |  |  ||||  | | | |      ||||| || ||||| |  || ||| |||| |||||||| || || ||||||||||||||||||||||||
----------------------------------------gtatgtagagaatgtgttagcagaaatgccaatttgttcttcctatgatgcatcattggcattttttgtaaatgggtcagaatttttatttatttggactgactgatgtaattgtctatcagGATATTGTGCTGATGGCTGTTCAGCCATTGCAGACTCAGGGACTTCTTTGTTGGCAGGTCCAACG

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S99_158V6.1 (Physcomitrella patens), 3'ss of exon 6
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgaca-caagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                         |   |  | | | || |  |  |   | | ||    | |    || |||  |||| |   ||    |  | ||       |  | |    ||  |    |||| | |||||| ||||| ||||| |||||||||||||| ||||||||| |||| || ||||| |||
---------------------------------------------------------gtctatgatgtagagtc--gcatcgaacatctgacctgatcactacaagtgcatagtccatagatctcatctgattaggagttatcttaaatctctttgcagGATTCTGTGCTGGAGGATGTGCTGCAATTGCAGATTCCGGAACTTCTCTGTTAGCTGGTCCTACG

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ34433 (Selaginella moellendorffii), 3'ss of exon 5
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                                                                      | |   ||||||  |  || |         || |    |      ||      |||||| ||||||   ||| ||||| |||||||||||||||||||||||  || | |  ||||| |||
-----------------------------------------------------------------------------------------------------gttatatcataat-ggcttgctatacgcactaggtcttaatggttttatgtttgcagGGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ06917 (Selaginella moellendorffii), 3'ss of exon 5
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                      | ||   |  | |  |    | | | | ||   |        | | ||||    ||||||  |  || |   |     ||||    |       |      |||||| ||||||   ||| ||||| |||||||||||||||||||||||  || | || ||||| |||
------------------------------------------------------gcagttcaacatgggagatgtggctgtggatggccagagcacaggttata---tcataat-ggcttgctatatgcactagttcttaatggtttcatgtttgcagGGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGCTGGTCCTACG

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ34434 (Selaginella moellendorffii), 3'ss of exon 5
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                                                                      | |   ||||||  |  || |   |     | ||    |      ||      |||||| ||||||   ||| ||||| |||||||||||||||||||||||  || | || ||||| |||
-----------------------------------------------------------------------------------------------------gttatatcataat-ggcttgctatatgcactaattcttaatggatttatgtttgcagGGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGCTGGTCCTACG

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ34432 (Selaginella moellendorffii), 3'ss of exon 5
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                                                                                                      | |   ||||||  |  || |   |     ||||    |      ||      |||||| ||||||   ||| ||||| |||||||||||||||||||||||  || | |  ||||| |||
-----------------------------------------------------------------------------------------------------gttatatcataat-ggcttgctatatgcactagttcttaatggttttatgtttgcagGGTTCTGTGCTAAAGGATGTGCTGCAATTGCAGATTCTGGAACTTCACTGCTTGTTGGTCCTACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352794761|gb|FQ475259.1|FQ475259
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|30300182|gb|CB976976.1|CB976976
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACTACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|27579600|gb|CB002295.1|CB002295
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|30251118|gb|CB968851.1|CB968851
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|110718432|gb|EE095257.1|EE095257
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|34549541|gb|CF517773.1|CF517773
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|33402264|gb|CF207891.1|CF207891
EST:     TGGCAGTTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TGGCAGTTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|161719906|gb|FC066714.1|FC066714
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|110701137|gb|EE078403.1|EE078403
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|110724332|gb|EE100065.1|EE100065
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|27583889|gb|CB006584.1|CB006584
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|34542385|gb|CF510617.1|CF510617
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|110387693|gb|EC952381.1|EC952381
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|46918171|gb|CN547500.1|CN547500
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|110724931|gb|EE101189.1|EE101189
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|26265277|gb|CA816340.1|CA816340
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|30253215|gb|CB970766.1|CB970766
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|110723066|gb|EE099952.1|EE099952
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|27585499|gb|CB008194.1|CB008194
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|71865136|gb|DT014191.1|DT014191
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|30299773|gb|CB976567.1|CB976567
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|30300771|gb|CB977565.1|CB977565
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
EST: gi|110684973|gb|EE062864.1|EE062864
EST:     TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTG                         GGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT
genomic: TTTGATATGGGCGAAGTTCTTATTGATGGTGAAACAACTGgtgagacccc ... accacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG
                              gtttgac  putative branch site (score: 4)
                                              ccacctc  putative PPT
      ataattagtatgatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagacccctcttgaaaccattgtgtgctttataaaccaaaaagtaggaaattggaggaaagaaggaaaagcctagatttagagacctttttttaatggtataagcacataattagtatgattattatgtcagtttgacacaagcataccacctcagGGTACTGTGCCGGAGGTTGTGCAGCAATTGCAGATTCTGGAACTTCTTTGTTGGCAGGTCCAACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT