1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taatatggttctatgtcatttttttccaagatgttgtgtttggtttgagttttatttttaattaaatgatttttgattatgggctaaatatcaaatgcagAAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCA
species | Vitis vinifera |
transcript | Vv10s0116g00980.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGCCGCCCTCCAATTGATGCTAGAAAGGGAAAGCAGAATATT AAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACAEST: gi|110400177|gb|EC966725.1|EC966725
genomic: CGCCGCCCTCCAATTGATGCTAGAAAGGGAAAGCAGAATATTgtaagtgttc ... tcaaatgcagAAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACA
EST: CGCCGCCCTCCAATTGATGCTAGAAAGGGAAAGCAGAATATT AAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACA
genomic: CGCCGCCCTCCAATTGATGCTAGAAAGGGAAAGCAGAATATTgtaagtgttc ... tcaaatgcagAAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACA
tgagttttatttttaattaaatgatttttgattatgggctaaatatcaaatgcagAAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCA
ggctaaa putative branch site (score: 3)
tttatttttaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatatggttctatgtcatttttttccaagatgttgtgtttggtttgagttttatttttaattaaatgatttttgattatgggctaaatatcaaatgcagAAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCA
- - - - - - - - - - - - -ccaagat
- - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatggg