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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggatatttcttttcatctttacatgatatcttgtcaccagtttccttaaattaatttcctccattgttgttattttgattggtggtgtacagTGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAATGGTGATGAGTTTTTGTGCCGGTGTTGGGGCTTCTACTACACACACATG

Basic information

species Vitis vinifera
transcript Vv10s0116g00680.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G00570.1 (Glycine max), 3'ss of exon 7
gtaatggatatttcttttcatctttacatgatatcttgtcaccagtttccttaaattaatttcctccattgttgttattttgattggtg-gtgtacagTGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAATGGTGATGAGTTTTTGTGCCGGTGTTGGGGCTTCTACTACACACACATG
                |   |  |    ||   | |  |     ||||  ||   |||||||||   |||  | | |  |  ||   |  |  | |||||||||| ||  | |||||||||||||| ||| |||||||||| ||||||||||| ||||| | |||  | |||||||| ||||||||| ||||  | ||
---------------gtatgtgatcggctggagtgtgatttt--gtttttttg--ttaatttcca--attaatctcaaatatatatatatgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACTGCACATGCTTG

upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G45070.1 (Glycine max), 3'ss of exon 7
gtaatggatatttcttttcatctttacatgatatcttgtcaccagtttccttaaattaatttcctccattgttgttattttgattggtggtgtacagTGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAATGGTGATGAGTTTTTGTGCCGGTGTTGGGGCTTCTACTACACACACATG
                |   |  |    ||   | |         ||   |   |||||| |   |   | |  | |  |  | |    |  | |||||||||| ||  | |||||||||||||| ||| |||||||||| ||||||||||| ||||| | |||  | |||||||| ||||||||  | ||  | ||
---------------gtatgtgatcgagtggagtgtgaat-ttgtttgtttccgattaatattaacatatatcctcaactcaaatatatgcatgcagTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACCGCGCATGCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156737209|gb|EV241323.1|EV241323
EST:     ACGTCTAGCAAGTGCCATGGCCAGCAACATTCCTGCAGGAGATGTTGGTG                         TGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAA
genomic: ACGTCTAGCAAGTGCCATGGCCAGCAACATTCCTGCAGGAGATGTTGGTGgtaatggata ... tggtgtacagTGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttccttaaattaatttcctccattgttgttattttgattggtggtgtacagTGATAACAAGCCCAGAGGGAAGGAAAAGCATGTTGAAGCTGGCTGAGAGAATGGTGATGAGTTTTTGTGCCGGTGTTGGGGCTTCTACTACACACACATG
     tccttaaattaattt  TA-rich tract