Sequence
atgc intronic sequence ATGC exonic sequencegtatgccatcaactctatggaaacctaggagtgcatcttattgacttatttattttttattcttatttgtaataaaatatgactgtattaatttggggacaaccagcattgtccattatttgagcatattaatttcatatgttagtttactaatgtgctcatacttgcacctgatacatattgcatctgtcagCTCCTCAGGAAATAGATGAATATGAACTTGTCGATCCTGTTGATATATTGACCCCTTTAGAAAAGTCAGGATTTTGGGATGGAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G068755_T03 (Zea mays), 3'ss of exon 7
gtatgccatcaactctatggaaacctaggagtgcatcttattgacttatttattttttattcttatttgtaataaaatatgactgtattaatttggggacaaccagcattgtccattatttgagcatattaatttcatatgttagtttact-aatgtgctcatacttgcacctgatacatattgcatctgtcagCTCCTCAGGAAATAGATGAATATGAACTTGTCGATCCTGTTGATATATTGACCCCTTTAGAAAAGTCAGGATTTTGGGATGGAGTG
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----------------------------------------------------------------------------------gtgtgttcttctgaggattat------------ttatctgg--atattgctct----tggtagtttgttcaaactaatgatggaaatactt-atata-attctactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G070126_T01 (Zea mays), 3'ss of exon 7
gtatgccatcaactctatggaaacctaggagtgcatcttattgacttatttattttttattcttatttgtaataaaatatgactgtattaatttggggacaaccagcattgtccattatttgagcatattaatttcata--tgttagtttactaatgtgctcatacttgcacctgatacata-ttgcatctgtcagCTCCTCAGGAAATAGATGAATATGAACTTGTCGATCCTGTTGATATATTGACCCCTTTAGAAAAGTCAGGATTTTGGGATGGAGTG
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---------------------------------------------------------------------------------------------------------gtgttcttctgaggattattatatggatattgctgttgatagtttgttcaga--ctaatgatggaaatacttacataattctgctttgcagCCCCTGTGGAGATCGATGAATACGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTTTGGGACGGTGTG
upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G29520.1 (Glycine max), 3'ss of exon 4
gtatgccatcaactctatggaaacctaggagtgcatcttattgacttatttattttttattcttatttgtaataaaatatgactgtattaatttggggacaaccagcattgtccattatttgagcatattaatttcatatgttagtttactaatgtgctcatacttgcacctgatacatattgcatctgtcagCTCCTCAGGAAATAGATGAATATGAACTTGTCGATCCTGTTGATATATTGACCCCTTTAGAAAAGTCAGGATTTTGGGATGGAGTG
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----------------------------------------------------------------------------------gtatgtaaaatttagtatctggagtat-gtttttctttttctcagac-atgctaacatgtctctcctttgtactactaatattctcatttttcaaatactttgattatcagCTCCTCAAGAAATCGATGAATATGAACTTGTTGATCCTGTTGATATATTGACTCCTTTAGAGAAGTCAGGATTTTGGGATGGAGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgttagtttactaatgtgctcatacttgcacctgatacatattgcatctgtcagCTCCTCAGGAAATAGATGAATATGAACTTGTCGATCCTGTTGATATATTGACCCCTTTAGAAAAGTCAGGATTTTGGGATGGAGTG
tttactaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgccatcaactctatggaaacctaggagtgcatcttattgacttatttattttttattcttatttgtaataaaatatgactgtattaatttggggacaaccagcattgtccattatttgagcatattaatttcatatgttagtttactaatgtgctcatacttgcacctgatacatattgcatctgtcagCTCCTCAGGAAATAGATGAATATGAACTTGTCGATCCTGTTGATATATTGACCCCTTTAGAAAAGTCAGGATTTTGGGATGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA