Sequence
atgc intronic sequence ATGC exonic sequencegtacgcccttttgtgttttattatattaagaccctactctggattatatgaagacattccatgttcactaatttttactcaatttcaaacgatactttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 3'ss of exon 7
gtacgcccttttgtgttttattatattaagaccctactctggattatatgaagacattccatgttcactaatttttactcaatttcaaacgatactttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT
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gtatggtcatt---actttctcatgttacagcatggcaacaaatttctt-------ctccatgtttcctagagataaacttctcttaatctaagc-----agGTTTTCTCTTGGGAACCAATAAGATGTCATGATACCGTTGATGTGGGATGGTCTAGACTGTCTGATCTAAATGTCCACGAGGGAAAACTTCTTGGTTGTT
upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G406553_T04 (Zea mays), 3'ss of exon 7
gtacgcccttttgtgtt-ttattatattaagaccctactctggattatatgaagacattccatgttcactaatttttactcaatttcaaacgatactttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT
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---------gtagtgctattattttctcaagtgatcatgtcaagcttgcttcttgtaccctatgacttctaaagatatttttttctcaaactaagc-----agGTTTTCTCCTGGGAGCCAATAAGATGCCATGATACTGTCGATGTGGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTT
upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G160702_T01 (Zea mays), 3'ss of exon 7
gtacgcccttttgtgttttattatattaagaccctactctggattatatgaagacattccatgttcactaatttttactcaatttcaaacgatactttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT
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-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngactgaactagagattcgtaaacttttcttaa-attaagcagGTTTTCTCTTGGGAGCCAATAAGATGCCATGATACTGTGGACGTGGGATGGTCTAGACTTGCCGATTTGAATGTCCATGAGGGAAAACTTCTTGGTTGTT
upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G00890.1 (Glycine max), 3'ss of exon 8
gtacgcccttttgtgttttattatattaagaccctactctggattatatgaagacattccatgttcactaatttttactcaatttcaaacgatactttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT
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-------------------------gtaaggcccatttttagttgatttatttaaggtaatcatttatcaaggtg-acgatgctctgcttggttctgtttagGTTTTCTCTTGGGAACCTATAAGATGCCATGATATGGTGGATGTGGGTTGGTCTAGATTGTCAGATCTTAATTTTCATGAAGGAAAACTTCTTGGCTGCT
upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G09360.1 (Glycine max), 3'ss of exon 8
gtacgcccttttgtgttttattatattaagaccctactctggattatatgaagacattccatgttcactaatttttactcaatttcaaacgatactttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT
|||| || | | | | || | | | || | || | || || ||| || | |||||||| || |||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||| || || || ||||
-------------------------gtaagccctgtttttagttgatttatttaaggttatcatttatcaaggta-acgatgttctgcttgattctgtttagGTTTTCTCTTGGGAACCTATAAGATGCCATGATATGGTGGATGTGGGTTGGTCTAGATTGTCAGATCTTAATGTTCATGAAGGAAAACTTCTTGGTTGCT
upper sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G23430.2 (Arabidopsis thaliana), 3'ss of exon 8
------------------------------------------------------------------gtacgcccttttgtgttttattatattaagaccctactctggattatatgaagacattccatgttcactaattt---ttactcaatttcaaacgatact--ttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT
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gtaaattcttctatactttgatatgcagtatgtagattcttaaattagatatatgttaattgaacaactcatcttttgaaggattcgttcttatgtttactcatttgctttcaaaatacacattcctactcttcttacctcactcctttggtttaatcctgtgcaaatcgtagATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgaagacattccatgttcactaatttttactcaatttcaaacgatactttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT
cactaat putative branch site (score: 2)
taatttttactcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgcccttttgtgttttattatattaagaccctactctggattatatgaagacattccatgttcactaatttttactcaatttcaaacgatactttatagGTTTTTTCATGGGAACCAATAAGATGCCATGATGCTGTGGATGTGGGGTGGTCTAGATTATCAGATCTTAACATTCATGAGGGAAAGCTCCTGGGCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT