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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataattatttcttacaattgcactactgacttgtgcctcattctctctgtgcttgagcattctgattttttggtttgaactctactagtttcctttttatgtagGTACCCTGTAATGACCCGTGCTTTGATGAAGGCAGGACGCCCAATCTTCTTCTCACTATGTGAATG

Basic information

species Vitis vinifera
transcript Vv10s0071g01100.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g01100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G34640.1 (Glycine max), 3'ss of exon 5
-----gtatataattat-ttcttacaattgcactactgac-ttgtgcctcattctctctgtgcttgagcattctgattttttggtttgaactctactagtttcctttttatgtagGTACCCTGTAATGACCCGTGCTTTGATGAAGGCAGGACGCCCAATCTTCTTCTCACTATGTGAATG
       | ||| |||| || | ||||      ||  |   || | |    || | |   | | | |  |     ||| |||  |||            ||   ||||| | ||| |||||| | ||||| ||  |||||||||||||||| || ||||||| |||||| |||||||||||
gtagtaaaaatagttatattttcacaacactgttatagttattttccaattttattttcatacctaaaaaagaaaattgtttttttt------------ttctttttttgtatagATACCCTATTATGACTCGATCTTTGATGAAGGCAGGCCGTCCAATCTACTTCTCGCTATGTGAATG

upper sequence: Vv10s0071g01100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G40990.1 (Glycine max), 3'ss of exon 7
------------------gtatataattatttcttacaattgcacta-ctgacttgtgcctcattct-ctctgtgcttgagcattctgattttttggtttgaactctactagtttcctttttatgtagGTACCCTGTAATGACCCGTGCTTTGATGAAGGCAGGACGCCCAATCTTCTTCTCACTATGTGAATG
                  |  ||| | | ||  ||  | |||  | |  ||| |  |    |||||  || ||| ||| | | |  | || | |    |||||  ||| | || | | | | |  ||| |||||| | ||||| || ||||| |||| ||| || || ||||||||||||||||||||||||||
gtagtcataagtatatttgcgtattagtgttaattttatttgatcaaattgaatattttaacattccactttgttcttta-cttctttatatgtaatcttgaaaacta-tggtcttcatatga-atagATACCCTATTATGACTCGAGCTTTAATGATGGCTGGTCGTCCAATCTTCTTCTCACTATGTGAATG

upper sequence: Vv10s0071g01100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G44820.1 (Glycine max), 3'ss of exon 7
-gta--tataattatttcttacaatt-gcacta--ctgacttgtgcctcattctctctgtgcttgagcattctgattttttggtttgaactct---actagtttcctttttatg--tagGTACCCTGTAATGACCCGTGCTTTGATGAAGGCAGGACGCCCAATCTTCTTCTCACTATGTGAATG
 |||   |||| ||| | |   | || |   ||   | | |||  |    |      | |     | || | || | |||   | | |  | |   |  | ||  |||  ||||  ||| |||||| | ||||| || ||||| |||| ||| || || ||||||||||||||||||||||||| 
ggtagtcataagtatatttgcgacttagtgttaattttatttgatcaaattgaatattttaacataacactttgttctttatatataattttttaaaacaattgtcttcatatgaataGATACCCTATTATGACTCGGGCTTTAATGATGGCTGGTCGTCCAATCTTCTTCTCACTATGTGAAT-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721026|gb|FC069980.1|FC069980
EST:     TATTTGAAGTATGATAATTGCAACAATGATGGTTCTAGGCCTACTGATCG                         GTACCCTGTAATGACCCGTGCTTTGATGAA
genomic: TATTTGAAGTATGATAATTGCAACAATGATGGTTCTAGGCCTACTGATCGgtatataatt ... ttttatgtagGTACCCTGTAATGACCCGTGCTTTGATGAA
EST: gi|161717651|gb|FC066276.1|FC066276
EST:     TATTTGAAGTATGATAATTGCAACAATGATGGTTCTAGGCCTACTGATCG                         GTACCCTGTAATGACCCGTGCTTTGATGAAGGCAGGACGCCCAATCTTCTT
genomic: TATTTGAAGTATGATAATTGCAACAATGATGGTTCTAGGCCTACTGATCGgtatataatt ... ttttatgtagGTACCCTGTAATGACCCGTGCTTTGATGAAGGCAGGACGCCCAATCTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgagcattctgattttttggtttgaactctactagtttcctttttatgtagGTACCCTGTAATGACCCGTGCTTTGATGAAGGCAGGACGCCCAATCTTCTTCTCACTATGTGAATG
          ttctgat  putative branch site (score: 3)
                                   ctagtttccttttt  putative PPT
                                            tttttatgta  TA-rich tract