Sequence
atgc intronic sequence ATGC exonic sequence...tccaaatagttggaataaggccttaatgagtcatagaatccagcagtgattggaactaaatttggccgtggtgctgattttcaatgtttactgcctgcagTTGTACATGGCACCTGTCACACACACTGACAGATACAGAGACAGCATTGATTTCTGGCGCAATGTATATGGAATTGATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA0048S00320.1 (Glycine max), 3'ss of exon 7
tccaaatagttggaataaggccttaatgagtcatagaatccagcagtgattggaacta-----aatttggccgtggtgctgattttcaatgtttactgcctgcagTTGTACATGGCACCTGTCACACACACTGACAGATACAGAGACAGCATTGATTTCTGGCGCAATGTATATGGAATTGATA
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--ttgagggttcaataattactcgatttagt--ttatctttaataatgatttgaccttttggtgtcttataaaaaatgctaatccttggtgtacttt-tctccagTTGTACATGGCTCCTGTCACACATACGGACAGATACAGTGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTGACA
upper sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G00220.1 (Glycine max), 3'ss of exon 7
tccaaatagttggaataaggccttaatgagtcatagaatccagcagtgattggaact--aaatttggcc----gtggtgctgattttcaatgtttactgcctgcagTTGTACATGGCACCTGTCACACACACTGACAGATACAGAGACAGCATTGATTTCTGGCGCAATGTATATGGAATTGATA
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---tggtggttaaattattacttgattcagt--ttatctttaatgaagatttgaccttttggtgtggtataaaaaaaagctgatccttggtgtacttt-tctccagTTGTACATGGCTCCTGTCACTCATACGGACAGATACAGTGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTGATA
upper sequence: Vv10s0071g00750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G20020.2 (Arabidopsis thaliana), 3'ss of exon 6
---tccaaatagttggaataaggccttaatgagtcatagaatccagcagtga--ttggaactaaatttggccgtggtgctgattttcaatgtttactgcctgcagTTGTACATGGCACCTGTCACACACACTGACAGATACAGAGACAGCATTGATTTCTGGCGCAATGTATATGGAATTGATA
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gtatgattataatccctttaaatattatatca-cagtatgatcaaatgatgactttgggaaagaaggcaatatttgataggttgttgtttgccttcttttgacagTTATACATGGCACCTATTTCTCACCCTGACAGATACAGTCACAGTATTGATTTTTGGCGCAATGTTTATGGAATTGATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgattggaactaaatttggccgtggtgctgattttcaatgtttactgcctgcagTTGTACATGGCACCTGTCACACACACTGACAGATACAGAGACAGCATTGATTTCTGGCGCAATGTATATGGAATTGATA
attttcaatgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccaaatagttggaataaggccttaatgagtcatagaatccagcagtgattggaactaaatttggccgtggtgctgattttcaatgtttactgcctgcagTTGTACATGGCACCTGTCACACACACTGACAGATACAGAGACAGCATTGATTTCTGGCGCAATGTATATGGAATTGATA
-ccaaata
- - - - - -ggaataa
- - - - - - - - - - - - - - - - - -gaatcca
- - - - - - - - - - - - - - - - - - - - - - - tgattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgct