Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttaatttgaccttattagatgctttaattcttgtaatcattttaaacttgcaactagacattgcttacagGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTGTGGGATATCCACCTTTTTATTCTGAGGAACCAATGTCAACATGCAGAAAG

Basic information

species Vitis vinifera
transcript Vv10s0003g05720.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g19290.1 (Oryza sativa), 3'ss of exon 6
gttagttaatttgaccttattagatgctttaattcttgt---aatcattttaaacttgcaactagacattgcttacagGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTGTGGGATATCCACCTTTTTATTCTGAGGAACCAATGTCAACATGCAGAAAG
    |||| |      | || |  |  |  | ||| |||   |||  |||  | ||  |   ||    |   ||| |||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||| || || |||||||| ||||| || |||
----gttagtacactttaatgaacttttgcagttcatgtcctaatgttttatatctctctcatatttgtactttatagGTGGTCACTTGGAGCCATTATGTATGAGATGCTTGTGGGTTATCCACCATTTTATTCGGAAGATCCAATGTCCACATGTAGGAAG

upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os05g43570.1 (Oryza sativa), 3'ss of exon 7
----------------------gttagt--taatttgaccttattagatgctttaattcttgtaat-cattttaaacttgcaactagacattgcttacagGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTGTGGGATATCCACCTTTTTATTCTGAGGAACCAATGTCAACATGCAGAAAG
                      ||   |  |  ||    | | |||  |    | || | |||  | | || |     |   | |  |  ||| |   |||||||| ||||| |||||||||||||| |||||||| || ||||| || || ||||| ||||| ||||||||||| |||||||||
gttagtctcttatcttgtaattgtccataattgttaagtcatgttatttttcctcatccatgtgcttcgttcttgttctcacattttattttgatcttagGTGGTCCCTTGGTGCAATTATGTATGAAATGCTTGTTGGTTATCCTCCATTCTATTCGGAGGATCCAATGTCAACCTGCAGAAAG

upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G049088_T02 (Zea mays), 3'ss of exon 6
gttag-ttaatttgaccttattagatgctttaattcttgtaatcattttaaacttgcaactagacattgcttacagGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTGTGGGATATCCACCTTTTTATTCTGAGGAACCAATGTCAACATGCAGAAAG
||||| || || | |  |  ||      |  |  ||   | ||    ||  |||| ||  | ||| ||  | | |||||||| ||||| ||||| ||||  || ||||||||||| ||||| || ||||||||||| || |||||||||||||| || |||
gttagcttgatcttatgtacttgtgcattacacatccaatgatgtccttttacttaca--ttgacttt--tcatagGTGGTCACTTGGTGCAATAATGTTCGAAATGCTTGTGGGGTATCCGCCATTTTATTCTGAAGACCCAATGTCAACATGTAGGAAG

upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G375904_T01 (Zea mays), 3'ss of exon 6
---------------------------------gttagttaatttgaccttattagatgctttaattcttgtaa-tcattttaaacttgcaactagacattgct----tacagGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTGTGGGATATCCACCTTTTTATTCTGAGGAACCAATGTCAACATGCAGAAAG
                                  ||||      |||   ||| |    |  |  ||  ||||  |   |  |  ||||  |  |    ||  |    |  |||||||| ||||| || ||||||||||| ||||| || || || || || |||||||| ||||| |||||||| || |||||||||
gttaggtttcttatcttgtaaatttctttaactattagacttggtgattctatcaccc-ccgtgctttctgtaccttgatggatgcttggtatcacttctttttcttctttagGTGGTCCCTTGGTGCTATTATGTATGAAATGCTAGTTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatgctttaattcttgtaatcattttaaacttgcaactagacattgcttacagGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTGTGGGATATCCACCTTTTTATTCTGAGGAACCAATGTCAACATGCAGAAAG
      ctttaat  putative branch site (score: 4)
       tttaattcttgtaatc  TA-rich tract