Sequence
atgc intronic sequence ATGC exonic sequence...tgacctcatgtaatatgtaggcctactatgtcaactgatttcactgtagttcccttgtattgttggagtgtgcttgacagtctcagtaacatacttgcagATTTGTGAGAGGTCATTGACATCTTCTACTGGTGGCCCTACTGGACCCCCTGCATCAAGTTATATAAGAGCGGAAATGCTTCCTAGTGGCTATCTAATCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G30000.1 (Glycine max), 3'ss of exon 7
tgacctcatgtaatatgtaggcctactatgtcaactgatttcac-tgtagttcccttgtattgttggagtgtg-cttgacagtctcagtaacata----------cttgcagATTTGTGAGAGGTCATTGACATCTTCTACTGGTGGCCCTACTGGACCCCCTGCATCAAGTTATATAAGAGCGGAAATGCTTCCTAGTGGCTATCTAATCC
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gtactgagtggaatct-tgattgttgtctttttcttgatttaggatgtggcttctttct-taggaagagtttgtctcgacagaatggctatttttttttttttgccttgcagATTTGTGAGAGGTCCTTGACTTCTTCAACTGGTGGCCCCACAGGGCCAGCTGCTTCAAACTTCATACGAGCTGAAATGCTTCCCAGTGGCTATCTAATTA
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G13110.1 (Glycine max), 3'ss of exon 7
tgacctcatgtaatatgtaggcc-tactatgtcaactgatttcac-tgtagttcccttgtattgttggagtgtgcttgacag--------tctcagtaacatacttgcagATTTGTGAGAGGTCATTGACATCTTCTACTGGTGGCCCTACTGGACCCCCTGCATCAAGTTATATAAGAGCGGAAATGCTTCCTAGTGGCTATCTAATCC
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--gtactgagcagaatcttgattgttgtgtttttcttgatttaggatgtggcttctttcttaggaagagtttctctcgacacagaatgactatttgtttttgccttgcagATTTGTGAAAGGTCCTTGACTTCTTCAACTGGTGGCCCCACAGGGCCTGCTGCTTCAAACTTCGTGAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTA
upper sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G02750.1 (Glycine max), 3'ss of exon 7
tgacctcatgtaatatgtaggcctactatgtcaactgatttcactgtagttcccttgtattgttggagtgtgcttgac--agtctcagtaac-atacttgcagATTTGTGAGAGGTCATTGACATCTTCTACTGGTGGCCCTACTGGACCCCCTGCATCAAGTTATATAAGAGCGGAAATGCTTCCTAGTGGCTATCTAATCC
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--ttttgatgtgttttttgtcaatgtattgcaaaat-atcgaatgattgtttccttttatgatttaaaactaatttgctcaattgaaattgtgatggttgcagATATGTGAGAGATCATTGACATCCTCAACTGGTGGCCCCACAGGGCCTCCTTCTACAACCTTTGTACGAGCTGAAATGCTTCCCAGTGGTTTTCTAGTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtagttcccttgtattgttggagtgtgcttgacagtctcagtaacatacttgcagATTTGTGAGAGGTCATTGACATCTTCTACTGGTGGCCCTACTGGACCCCCTGCATCAAGTTATATAAGAGCGGAAATGCTTCCTAGTGGCTATCTAATCC
cagtaac putative branch site (score: 2)
ttgtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgacctcatgtaatatgtaggcctactatgtcaactgatttcactgtagttcccttgtattgttggagtgtgcttgacagtctcagtaacatacttgcagATTTGTGAGAGGTCATTGACATCTTCTACTGGTGGCCCTACTGGACCCCCTGCATCAAGTTATATAAGAGCGGAAATGCTTCCTAGTGGCTATCTAATCC
- -cctcatg
- - - - - - - - - - -cctacta
- - - - - - - - - - - - - - - - - - - - -cactgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagtctc