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...ttaatctaggtatataagtatccacttctcatatctcatattgttctaatttcttggaaatttcaattgtaacaaaaatgtaagtatgaaatcattttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCATGGAGCACTTCCTGAGGAAAGGATACGAGCTGTAGAAACAGGAGGTTGTC
species | Vitis vinifera |
transcript | Vv10s0003g03120.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTTGCTGCA GTGACAAATGGTATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCATEST: gi|110377199|gb|EC942256.1|EC942256
genomic: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCAgtgagtatcg ... atcattttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAT
EST: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTTGCTGCA GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCATEST: gi|110370143|gb|EC934323.1|EC934323
genomic: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCAgtgagtatcg ... atcattttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAT
EST: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCA GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCATEST: gi|30297878|gb|CB974672.1|CB974672
genomic: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCAgtgagtatcg ... atcattttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAT
EST: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTTGCTGCA GTGACAAATGGTATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCATEST: gi|22014004|gb|BQ799038.1|BQ799038
genomic: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCAgtgagtatcg ... atcattttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAT
EST: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCA GTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCATEST: gi|22015218|gb|BQ800252.1|BQ800252
genomic: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCAgtgagtatcg ... atcattttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAT
EST: TGATGTTGGCAC-GTGTCAATG-TTGCGCGAAAAATACAGCCTCGCTGCA GTGACAAATGATATATTCA-TAAAGAGGATGGTGAGTTCTTGGTGAAGCAT
genomic: TGATGTTGGCACTGTGTCAATGTTTGCGCGAAAAATACAGCCTCGCTGCAgtgagtatcg ... atcattttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCAT
ctaatttcttggaaatttcaattgtaacaaaaatgtaagtatgaaatcattttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCATGGAGCACTTCCTGAGGAAAGGATACGAGCTGTAGAAACAGGAGGTTGTC
ttgtaac putative branch site (score: 2)
tcatttt putative PPT
aaatttcaattgtaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatctaggtatataagtatccacttctcatatctcatattgttctaatttcttggaaatttcaattgtaacaaaaatgtaagtatgaaatcattttagGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCATGGAGCACTTCCTGAGGAAAGGATACGAGCTGTAGAAACAGGAGGTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - -gtatcca
- - - - - - - - - - - - cttctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa